View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_35 (Length: 237)
Name: NF20626_low_35
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 50557625 - 50557418
Alignment:
| Q |
14 |
tttttctattatgctttctactatttattactctaccaatattaatgaagaacatttttgtaaagtgattcatagtttcttaatctggtgctgatcaatg |
113 |
Q |
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| T |
50557625 |
ttttcctattatgctttctactatttattactctaccaatattaatgaagaacatttttgtaaagtgattcatagtttcttaatctggtgctgatcaatg |
50557526 |
T |
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| Q |
114 |
aagagaccactcactctggagtgttggtggacaatatttagtaccagtgattagtgttctcagtcatcttgtcagttttccatgccatggatacaatata |
213 |
Q |
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| T |
50557525 |
aagagaccactcactctggagtgttggtggacaatatttagtaccagtgattagtgttctcagtcatcttgtcagttttccatgccttggatgcaatata |
50557426 |
T |
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| Q |
214 |
gtaaaacc |
221 |
Q |
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|||||||| |
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| T |
50557425 |
gtaaaacc |
50557418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 50818963 - 50818892
Alignment:
| Q |
150 |
tttagtaccagtgattagtgttctcagtcatcttgtcagttttccatgccatggatacaatatagtaaaacc |
221 |
Q |
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| T |
50818963 |
tttagtactagtgattagtgttctcagtaatcttgtcagttttccatgccttggatacaatatagtaaaacc |
50818892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 50856901 - 50856972
Alignment:
| Q |
150 |
tttagtaccagtgattagtgttctcagtcatcttgtcagttttccatgccatggatacaatatagtaaaacc |
221 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50856901 |
tttagtactagtgattagtgttctcagtaatcttgtcagttttccatgccttggatacaatatagtaaaacc |
50856972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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