View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20626_low_36 (Length: 230)

Name: NF20626_low_36
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20626_low_36
NF20626_low_36
[»] chr6 (17 HSPs)
chr6 (1-214)||(25485057-25485272)
chr6 (1-214)||(25512885-25513100)
chr6 (1-214)||(26144863-26145078)
chr6 (28-214)||(25581717-25581905)
chr6 (1-214)||(25546976-25547193)
chr6 (74-214)||(26057915-26058055)
chr6 (74-214)||(26077885-26078025)
chr6 (83-169)||(27602744-27602830)
chr6 (94-165)||(26825877-26825949)
chr6 (84-169)||(26658029-26658115)
chr6 (84-169)||(26764000-26764086)
chr6 (93-169)||(26863651-26863728)
chr6 (1-63)||(26637719-26637781)
chr6 (1-63)||(26743685-26743747)
chr6 (26-63)||(25076014-25076051)
chr6 (93-177)||(26850704-26850789)
chr6 (109-170)||(27704309-27704370)
[»] chr1 (2 HSPs)
chr1 (94-162)||(28125730-28125799)
chr1 (93-162)||(28130767-28130837)
[»] chr8 (1 HSPs)
chr8 (110-165)||(22023288-22023343)
[»] chr4 (1 HSPs)
chr4 (110-169)||(18697531-18697590)
[»] chr2 (1 HSPs)
chr2 (110-154)||(17991277-17991321)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 25485272 - 25485057
Alignment:
Q  1 tatatgggttaaatatatacaaagattcaatgtcaagactttcatatagttgaactcctgcatnnnnnnnnntaat--aagtttaaattaaaattataat 98  Q
    ||||||||||||||||  ||||| || ||||||||||||||||||||||||||||||||||||          ||   || || ||||||||||||||||    
T  25485272 tatatgggttaaatattcacaaaaatccaatgtcaagactttcatatagttgaactcctgcataaaaaataaaaaataaaattgaaattaaaattataat 25485173  T
Q  99 ctaatagtgaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagacagagactgcaaaggacaatttatccatt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||    
T  25485172 ctaatagtgaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcgaaatacaagaaagagacttcaaaggacaacttatccatt 25485073  T
Q  199 cccaatatctcaaact 214  Q
     |||||||||||||||    
T  25485072 tccaatatctcaaact 25485057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 25513100 - 25512885
Alignment:
Q  1 tatatgggttaaatatatacaaagattcaatgtcaagactttcatatagttgaactcctgcatnnnnnnnnnt--aataagtttaaattaaaattataat 98  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||            |||||||| |||||||||||| |||    
T  25513100 tatatgggttaaatattcacaaaaattcaatgtcaagactttcatatagttgaactcctgcataaaaaacaaataaataagttgaaattaaaattaaaat 25513001  T
Q  99 ctaatagtgaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagacagagactgcaaaggacaatttatccatt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||     |||||    
T  25513000 ctaatagtgaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagatagagattccaaaggacaaacacaccatt 25512901  T
Q  199 cccaatatctcaaact 214  Q
     |||||||||||||||    
T  25512900 tccaatatctcaaact 25512885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 26145078 - 26144863
Alignment:
Q  1 tatatgggttaaatatatacaaagattcaatgtcaagactttcatatagttgaactcctgcatnnnnnnnnnt--aataagtttaaattaaaattataat 98  Q
    ||||||||||||||||  | ||   ||||||||||||||||||||||||||||||||||||||            |||||| | ||||||||||||||||    
T  26145078 tatatgggttaaatatcgagaatagttcaatgtcaagactttcatatagttgaactcctgcataaaaaacaaataaataagctgaaattaaaattataat 26144979  T
Q  99 ctaatagtgaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagacagagactgcaaaggacaatttatccatt 198  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||   ||||||||    
T  26144978 ctaatagagaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcgaaatacaagatagagacttcaaaggacagaatatccatt 26144879  T
Q  199 cccaatatctcaaact 214  Q
     |||||||||||||||    
T  26144878 tccaatatctcaaact 26144863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 25581905 - 25581717
Alignment:
Q  28 caatgtcaagactttcatatagttgaactcctgcatnnnnnnnnnt--aataagtttaaattaaaattataatctaatagtgaattatcaatatacacaa 125  Q
    |||| |||||||||||||||||||||||||||||||            |||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  25581905 caatttcaagactttcatatagttgaactcctgcataaaaaacaaataaataagttgaaattaaaattataatctaataatgaattatcaatatacacaa 25581806  T
Q  126 ttgaaaaatgaacttatttcacttgccttgctcaaaatacaagacagagactgcaaaggacaatttatccattcccaatatctcaaact 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  | ||| |||||||||| |||||||||||||    
T  25581805 ttgaaaaatgaacttatttcacttgccttgctcaaaatacaagacagagacttgaaatcataatctatccattccaaatatctcaaact 25581717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 25547193 - 25546976
Alignment:
Q  1 tatatgggttaaatatatacaaagattcaatgtcaagactttcatatagttgaactcctgcatnnnnnnnnnt--aataagtttaaattaaaattata-- 96  Q
    ||||||||||||||||  |||||||| |||| |||||||||||||||||||||||||||||||            |||||||| || || ||||||||      
T  25547193 tatatgggttaaatattcacaaagatccaatatcaagactttcatatagttgaactcctgcataaaaaataaataaataagttgaagtttaaattatata 25547094  T
Q  97 atctaatagtgaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagacagagactgcaaaggacaatttatcca 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||| ||||||||||  | ||||    
T  25547093 atctaatagtgaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcgaaatacaagatggagacttcaaaggacaaaatctcca 25546994  T
Q  197 ttcccaatatctcaaact 214  Q
    || |||||||||||||||    
T  25546993 tttccaatatctcaaact 25546976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 26058055 - 26057915
Alignment:
Q  74 aataagtttaaattaaaattataatctaatagtgaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagacaga 173  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||    
T  26058055 aataagttgaaatgaaaattataatctaatagtgaattatcaatatacacaattgaaaaatgaacctatttcacttgccttgctcgaaatacaagataga 26057956  T
Q  174 gactgcaaaggacaatttatccattcccaatatctcaaact 214  Q
    |||| |||||||| | ||||||||| |||||||||||||||    
T  26057955 gacttcaaaggactacttatccatttccaatatctcaaact 26057915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 26078025 - 26077885
Alignment:
Q  74 aataagtttaaattaaaattataatctaatagtgaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagacaga 173  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||    
T  26078025 aataagttgaaatgaaaattataatctaatagtgaattatcaatatacacaattgaaaaatgaacctatttcacttgccttgctcgaaatacaagataga 26077926  T
Q  174 gactgcaaaggacaatttatccattcccaatatctcaaact 214  Q
    |||| |||||||| | ||||||||| |||||||||||||||    
T  26077925 gacttcaaaggactacttatccatttccaatatctcaaact 26077885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 27602744 - 27602830
Alignment:
Q  83 aaattaaaattataatctaatagtgaattatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaaga 169  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  27602744 aaattaaaattataatctaatagtgaattataaatatacacaattgaaaaatgaatttatttcacttgccttgttcaaaatacaaga 27602830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 26825949 - 26825877
Alignment:
Q  94 ataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatac 165  Q
    |||||||| ||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  26825949 ataatctagtagtgaatttataaatatacacaattggaaaatgaacttatttcacttgccttgttcaaaatac 26825877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 26658115 - 26658029
Alignment:
Q  84 aattaaaattataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaaga 169  Q
    ||||| ||||||||| ||||| |||||| || ||||||||| || |||||||||||||||||||||||||||| |  ||||||||||    
T  26658115 aattataattataatataatactgaatttataaatatacacgatcgaaaaatgaacttatttcacttgccttgtttgaaatacaaga 26658029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 26764086 - 26764000
Alignment:
Q  84 aattaaaattataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaaga 169  Q
    ||||| ||||||||| ||||| |||||| || ||||||||| || |||||||||||||||||||||||||||| |  ||||||||||    
T  26764086 aattataattataatataatactgaatttataaatatacacgatcgaaaaatgaacttatttcacttgccttgtttgaaatacaaga 26764000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 26863728 - 26863651
Alignment:
Q  93 tataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaaga 169  Q
    |||| ||| |||||||||| || |||||||||||||| |||||||| |||| |||||||||||| |||||| ||||||    
T  26863728 tatactctcatagtgaatttataaatatacacaattggaaaatgaaattatatcacttgccttgttcaaaaaacaaga 26863651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26637781 - 26637719
Alignment:
Q  1 tatatgggttaaatatatacaaagattcaatgtcaagactttcatatagttgaactcctgcat 63  Q
    |||||| ||||||||   |||| | ||||||||||||||||||||||||||||||| ||||||    
T  26637781 tatatgagttaaatagtgacaatggttcaatgtcaagactttcatatagttgaacttctgcat 26637719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26743747 - 26743685
Alignment:
Q  1 tatatgggttaaatatatacaaagattcaatgtcaagactttcatatagttgaactcctgcat 63  Q
    |||||| ||||||||   |||| | ||||||||||||||||||||||||||||||| ||||||    
T  26743747 tatatgagttaaatagtgacaatggttcaatgtcaagactttcatatagttgaacttctgcat 26743685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 25076051 - 25076014
Alignment:
Q  26 ttcaatgtcaagactttcatatagttgaactcctgcat 63  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  25076051 ttcaatatcaagactttcatatagttgaattcctgcat 25076014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 26850789 - 26850704
Alignment:
Q  93 tataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagacagagact 177  Q
    |||||||| ||||| |||| || |||||||||||||| ||||| |  ||||||||||||||||| || ||| ||| || |||||||    
T  26850789 tataatcttatagtaaatttataaatatacacaattggaaaattatgttatttcacttgccttgttcgaaaaacatgatagagact 26850704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 27704309 - 27704370
Alignment:
Q  109 attatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaagac 170  Q
    ||||| |||||| ||| ||  |||||||| ||||||||||||||||||| ||||||| ||||    
T  27704309 attataaatatatacagttataaaatgaagttatttcacttgccttgcttaaaatactagac 27704370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 28125730 - 28125799
Alignment:
Q  94 ataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaa 162  Q
    |||||||||||||||||| || |||||||||||||  |||||||||||||||||||||||||| ||||||    
T  28125730 ataatctaatagtgaattcataaatatacacaatttgaaaatgaacttatttcacttgccttgttcaaaa 28125799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 28130767 - 28130837
Alignment:
Q  93 tataatctaatagtgaatt-atcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaa 162  Q
    ||||||||||| ||||||| |  |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  28130767 tataatctaatggtgaattcaaaaatatacacaattggaaaatgaacttatttcacttgccttgttcaaaa 28130837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 22023343 - 22023288
Alignment:
Q  110 ttatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatac 165  Q
    |||| |||||| ||||||  ||| |||| |||||||||||||||||||||||||||    
T  22023343 ttataaatatatacaattagaaagtgaagttatttcacttgccttgctcaaaatac 22023288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 18697531 - 18697590
Alignment:
Q  110 ttatcaatatacacaattgaaaaatgaacttatttcacttgccttgctcaaaatacaaga 169  Q
    |||| |||||| ||||||  |||||||| |||||||||||||||||||  ||||||||||    
T  18697531 ttataaatatatacaattagaaaatgaaattatttcacttgccttgctgcaaatacaaga 18697590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 17991277 - 17991321
Alignment:
Q  110 ttatcaatatacacaattgaaaaatgaacttatttcacttgcctt 154  Q
    |||| |||||||||||||  |||||||| ||||||||||||||||    
T  17991277 ttataaatatacacaattccaaaatgaaattatttcacttgcctt 17991321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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