View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_4 (Length: 579)
Name: NF20626_low_4
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_4 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 10 - 561
Target Start/End: Original strand, 22079070 - 22079610
Alignment:
| Q |
10 |
attattctgttagatggccaaataataattaataagtacttaattattaataacctgtggcttccttaatcttagcattgtgaagaacaatgatagttgg |
109 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22079070 |
attattctgttagatgcccaaataataattattaagtacttcattattaataacatgtggcttccttaatcttagcattgtgaagaagaatgatagttgg |
22079169 |
T |
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| Q |
110 |
tccagactcagaattgttgcaaaaattcaggaattgaagaccaaaatcctcccacaatgtacaacttagtaatgttcccctgtagatatatttcatatgg |
209 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
22079170 |
tccaaactcagaattgttgcaaaaattaaggaattgaagaccaaaatcctcccacaatgtacaacttagtaatgttcccctgtagatagataaaatatgg |
22079269 |
T |
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| Q |
210 |
ttaagaaattttataaattgaaaatgacttctaatttcattaaagagattaataatgtactttaagtctttcatccaaaagttgatttgtattttcctag |
309 |
Q |
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| T |
22079270 |
ttaagaaatgttataaattgaaaatgacttctaatttcattaaagagattaataatgtactttaagtctttcatccaaaagttgatttgtattttcctag |
22079369 |
T |
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| Q |
310 |
atccagcttgagtctgagtgtatcctaattcatgaaaggctccaatgacatctatcaaacacataatagatctttaggtgaaatttgtatactcagactt |
409 |
Q |
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| T |
22079370 |
atccagcttgagtctgattgtatcctaattcatgaaaggctccaatgacatctatcaaacacataatagatctttaggtcaaa-----------agactt |
22079458 |
T |
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| Q |
410 |
agaaattgaaaaggaaaaagtagtccaatttacctatcaggacatctggccttactgctcccttcttgatctcatcaaagtccttaaagttgaaagatgg |
509 |
Q |
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| T |
22079459 |
acaaattgaaaaggaaaaagtagtccaatttacctattaggacatctggccttagtgctcccttcttgatctcatcaaagtccttaaagttgaaagatgg |
22079558 |
T |
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| Q |
510 |
tttgggaatgtcatgcttgtcaatgttgtcaacacttgttccaccattaaac |
561 |
Q |
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| T |
22079559 |
tttgggaatgtcatgcttgtcaatgttgtcaacacttgttccaccattaaac |
22079610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 124453 - 124560
Alignment:
| Q |
266 |
gtactttaagtctttcatccaaaagttgatttgtattttcctagatccagcttgagtctgagtgtatcctaattcatgaaaggctccaatgacatctatc |
365 |
Q |
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| T |
124453 |
gtactgtaagtctttcatccaaaagttgatttgaattttcctagatcgaggcacagtttgagtgtatcctaattcatgaaaggctccaatgacatctatc |
124552 |
T |
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| Q |
366 |
aaacacat |
373 |
Q |
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| T |
124553 |
aagcacat |
124560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 124305 - 124360
Alignment:
| Q |
59 |
ataacctgtggcttccttaatcttagcattgtgaagaacaatgatagttggtccag |
114 |
Q |
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| T |
124305 |
ataacctgtggctttcttaatcttagcattgtgcagaagaatgatagttggtccag |
124360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 267 - 367
Target Start/End: Original strand, 23699609 - 23699709
Alignment:
| Q |
267 |
tactttaagtctttcatccaaaagttgatttgtattttcctagatccagcttgagtctgagtgtatcctaattcatgaaaggctccaatgacatctatca |
366 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23699609 |
tactttaggtctttcatccagaagttgatttgtattttcctagatccaggtacagtttgagtgtatcctaattcatgaaatactccaatgacatctatca |
23699708 |
T |
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| Q |
367 |
a |
367 |
Q |
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| T |
23699709 |
a |
23699709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 438 - 532
Target Start/End: Original strand, 23699793 - 23699887
Alignment:
| Q |
438 |
tttacctatcaggacatctggccttactgctcccttcttgatctcatcaaagtccttaaagttgaaagatggtttgggaatgtcatgcttgtcaa |
532 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| || |||| |||||| | || |||||||| ||||||| |
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| T |
23699793 |
tttacctataaggacatctggccttactattcccttcttgatctcatcaaactccttgaaactgaatgatggtctaggtatgtcatgtttgtcaa |
23699887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 23699398 - 23699536
Alignment:
| Q |
49 |
ttaattattaataacctgtggcttccttaatcttagcattgtgaagaacaatgatagttggtccagactcagaattgttgcaaaaattcaggaattgaag |
148 |
Q |
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| T |
23699398 |
ttaattataaataacttgtggcttccttaattttagaattgtgaagaagaatgacaattggtccagaatcagatttg------gactttaggaattgaag |
23699491 |
T |
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| Q |
149 |
accaaaatcctcccacaatgtacaacttagtaatgttcccctgta |
193 |
Q |
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| T |
23699492 |
accatagtcttcccacagtgtacagtttaataatgttcccctgta |
23699536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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