View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_40 (Length: 205)
Name: NF20626_low_40
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 1496864 - 1497043
Alignment:
| Q |
16 |
attggattattactaaataaagatatctgcgacattgtgataatgtactcgactttgttgaggttgaaacttgtttaatataactgcaatggacacaagt |
115 |
Q |
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| T |
1496864 |
attggattattactaaataaagatatctgcgacattgtgataatgtactcgactttgttgaggttgaaacttgtttaatataactgcaatggacacaagt |
1496963 |
T |
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| Q |
116 |
atcattcttgtgttttcctgaattacagtggactggcagaaattagtgtatgtgtgtttgagttaagcattcatctcact |
195 |
Q |
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| T |
1496964 |
atcattcttgtgttttcctgaattacagtggactggcagtaattagtgtatgtgtgtttgagttaagcattcagctcact |
1497043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 1492038 - 1492202
Alignment:
| Q |
24 |
attactaaataaagatatctgcgacattgtgataatgtactcgactttgttgaggttgaaacttgtttaatataactgcaatggacacaagtatcattct |
123 |
Q |
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||||||||||||||||||| ||| |||||| |||||||||||| |||||||||||||| ||||||||||||| || |||||||||||||||||||||||| |
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| T |
1492038 |
attactaaataaagatatccgcggcattgtaataatgtactcggctttgttgaggttgtaacttgtttaataaaattgcaatggacacaagtatcattct |
1492137 |
T |
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| Q |
124 |
tgtg--ttttcctgaattacagtggactggcagaaattagtgtatgtgtgtttgagttaagcatt |
186 |
Q |
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| T |
1492138 |
tgtgtttttttctgaatttcagtgttctgttggtagttagtgtatgtgtgtttgagttaagcatt |
1492202 |
T |
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