View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20626_low_41 (Length: 202)
Name: NF20626_low_41
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 33834400 - 33834232
Alignment:
| Q |
14 |
tgagatgaatggaaacagtgattctactttatatttcatggtttgagtattttatgaggaaatataacaaaatttgaatagaaattaaaggaatatcatt |
113 |
Q |
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| T |
33834400 |
tgagatgaatggaaacagtgattctactttatatttcatggtttgagtattttatgaggaaatataacaaaatttgaatagaaattaaaggaagatcatt |
33834301 |
T |
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| Q |
114 |
ttttaatatatccaaactatagaacattactatatcgtatacatgtgtgatgcacatgtcagtttatat |
182 |
Q |
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| T |
33834300 |
ttttaatatatccaaactatagaacattactatatcgtatacatgtgtgatgcacatgtcagtttatat |
33834232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 33748280 - 33748113
Alignment:
| Q |
14 |
tgagatgaatggaaacagtgattctactttatatttcatggtttgagtattttatgaggaaatataacaaaatttgaatagaaattaaaggaatatca-t |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |
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| T |
33748280 |
tgagatgaatggaaacagtgattctactttatatttcatggtttgggtattttatgaggaaatataacaaaatttgaatagaaattaaatgaagatcatt |
33748181 |
T |
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| Q |
113 |
tttttaatatatccaaactatagaacattactatatcgtatacatgtgtgatgcacatgtcagtttat |
180 |
Q |
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| T |
33748180 |
tttttaatatatccaaactatagaatattactatatcgtatacatgtgtgatgcacatgtaagtttat |
33748113 |
T |
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