View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20626_low_5 (Length: 564)
Name: NF20626_low_5
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_5 |
 | |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 547
Target Start/End: Complemental strand, 47272 - 46742
Alignment:
| Q |
11 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47272 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactaatttttaattatcaatttacataacaaaatccatacatacaagactgtg |
47173 |
T |
|
| Q |
111 |
agtaggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaac--aagaaaatagaataactattttggtatgaaaatcga |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||| |
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|
| T |
47172 |
agtaggaatcatttaaattgttcccccggctacatcaagctaatcaaatttaaaacattaacccaagaaaatagaataactattttggtataaaaatcga |
47073 |
T |
|
| Q |
209 |
atcatctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgat |
308 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47072 |
atcatctattcttaagtattcttgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgat |
46973 |
T |
|
| Q |
309 |
tcaaagaaaatccatcagagaggtcaagaaataataggatcgccccaggcatttagcaattaaaaaacacaaattgaaaacaatattcaaatcgtaacaa |
408 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46972 |
tcaaagaaaatccatcagagagggcaacaaataataggatcgccc--------tagcaaataaaaaacacaaattgaaaacaatattcaaatcgtaacaa |
46881 |
T |
|
| Q |
409 |
atttgatcaaacttagggcaagtctatgtggtacatatccaatccacgtgatctttatttaaccatcagccgtgtattattttccttaagagtgtcacct |
508 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
46880 |
atttgatcaaacttagggcaagtttatgtggtacatatccaacctacgtgatctttatttaaccatcagccgtgtattattttccttaagagagttacct |
46781 |
T |
|
| Q |
509 |
gtcaagtttctttgcggaacaaaggttaggagtaaatct |
547 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
46780 |
gtcaagtttctttgcagaacaaaggttaggagtaaatct |
46742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 14 - 547
Target Start/End: Complemental strand, 11203351 - 11202820
Alignment:
| Q |
14 |
agatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtgagt |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||||||||| ||||||| |
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|
| T |
11203351 |
agatatcaatttaagaaggtaaggaggt--aacttcatatagaaaccaatttttaattatcagtttacatagcaaaatccatacatacaaggttgtgagt |
11203254 |
T |
|
| Q |
114 |
aggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtatgaaaatcgaatcat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
11203253 |
aggaatcatttaaattgttccaccggctacatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtgtgaaaatcgaatcat |
11203154 |
T |
|
| Q |
214 |
ctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgattcaaa |
313 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||| |||||||||||| |
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|
| T |
11203153 |
ctattcttaaatatccctgtaaacagaattggagatatcattaagataacaacatcagttgttgcaaggactaatagcaccgacatcattacgattcaaa |
11203054 |
T |
|
| Q |
314 |
gaaaatccatcagagaggtcaagaaataataggatcgccccaggcatttagcaattaaaaaacacaaattgaaaacaatattcaaatcgtaacaaatttg |
413 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| | ||| |||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
11203053 |
gaaaatccatcagagagggcaagaaataataggatcgccgccggcgtttagcaagtaaaaaacacaaattgaagacaacattcaaatcgtaacaaatttg |
11202954 |
T |
|
| Q |
414 |
atcaaacttagggcaagtctatgtggtacatatccaatccacgtgatctttatttaaccatcagccgtgtattattttccttaagagtgtcacctgtcaa |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
11202953 |
atcaaacttagggcaagtctatgtggtacatatccaacccacgtgatctttatttgaccatcagccgtatattattttccttaaatgtgtcacctgtcaa |
11202854 |
T |
|
| Q |
514 |
gtttctttgcggaacaaaggttaggagtaaatct |
547 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| |
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|
| T |
11202853 |
gtttctttgcagaacaaaggttaggtgtaaatct |
11202820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 20134318 - 20134653
Alignment:
| Q |
11 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20134318 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactaatttttaatcatcaatttacataacaaaatccatacatacaagactgtg |
20134417 |
T |
|
| Q |
111 |
agtaggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtatgaaaatcgaat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
20134418 |
agtaggaatcatttaaattgttccaccggctgtgtcaagccaatcaaatttaaaataagaacaagaaaatagaataactactttggtatgaagatcgaat |
20134517 |
T |
|
| Q |
211 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgattc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20134518 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgattc |
20134617 |
T |
|
| Q |
311 |
aaagaaaatccatcagagaggtcaagaaataatagg |
346 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20134618 |
aaagaaaatccatcagagagggcaagaaataatagg |
20134653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 422 - 517
Target Start/End: Original strand, 20134650 - 20134745
Alignment:
| Q |
422 |
tagggcaagtctatgtggtacatatccaatccacgtgatctttatttaaccatcagccgtgtattattttccttaagagtgtcacctgtcaagttt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20134650 |
tagggcaagtctatgtggtacatatccaacccacgtgatctttatttaaccatcagccgtgtattattttccttaagagtgtcacctgtcaagttt |
20134745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 44357753 - 44357418
Alignment:
| Q |
11 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactcattttcaattatcaatttacataacaaaatccatacatacaagactgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44357753 |
cacagatatcaatttaagaaggtaaagaggtgtaacttcacatagaaactaatttttaatcatcaatttacataacaaaatccatacatacaagactgtg |
44357654 |
T |
|
| Q |
111 |
agtaggaatcatttaaattgttccaccggctatatcaagccaatcaaatttaaaataagaacaagaaaatagaataactattttggtatgaaaatcgaat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
44357653 |
agtaggaatcatttaaattgttccaccggctgtgtcaagccaatcaaatttaaaataagaacaagaaaatagaataactactttggtatgaagatcgaat |
44357554 |
T |
|
| Q |
211 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgattc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44357553 |
catctattcttaaatattcctgtaaacagaattggagatatcattaagataatacaatcagttgttgcaaggattaatagcaccggcatcgttacgattc |
44357454 |
T |
|
| Q |
311 |
aaagaaaatccatcagagaggtcaagaaataatagg |
346 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44357453 |
aaagaaaatccatcagagagggcaagaaataatagg |
44357418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 422 - 517
Target Start/End: Complemental strand, 44357421 - 44357326
Alignment:
| Q |
422 |
tagggcaagtctatgtggtacatatccaatccacgtgatctttatttaaccatcagccgtgtattattttccttaagagtgtcacctgtcaagttt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44357421 |
tagggcaagtctatgtggtacatatccaacccacgtgatctttatttaaccatcagccgtgtattattttccttaagagtgtcacctgtcaagttt |
44357326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 372 - 547
Target Start/End: Complemental strand, 12325336 - 12325161
Alignment:
| Q |
372 |
aaaacacaaattgaaaacaatattcaaatcgtaacaaatttgatcaaacttagggcaagtctatgtggtacatatccaatccacgtgatctttatttaac |
471 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12325336 |
aaaacacaaattgaaaacaatatttaaatcgtaacaaatttgatccaacttagggcaagtctatgtggtacatatccaacccacgtgatctttatttaac |
12325237 |
T |
|
| Q |
472 |
catcagccgtgtattattttccttaagagtgtcacctgtcaagtttctttgcggaacaaaggttaggagtaaatct |
547 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
12325236 |
catcagccgtatattattttccttaagagtgtcacctgtcaagtttctttgcagaagaaaggttaggagtaaatct |
12325161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 160 - 293
Target Start/End: Original strand, 4431557 - 4431696
Alignment:
| Q |
160 |
ttaaaataagaacaagaaaatagaataactattttggtat------gaaaatcgaatcatctattcttaaatattcctgtaaacagaattggagatatca |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
4431557 |
ttaaaataagaactagaaaatagaataactattttggtatataaatgaaaatagaatcatcttatcttaaatattcccataaacagaatttgagacatca |
4431656 |
T |
|
| Q |
254 |
ttaagataatacaatcagttgttgcaaggattaatagcac |
293 |
Q |
| |
|
|||| || | | ||||||||| |||||| | ||||||||| |
|
|
| T |
4431657 |
ttaaaattacataatcagttgctgcaagaactaatagcac |
4431696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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