View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20626_low_9 (Length: 486)
Name: NF20626_low_9
Description: NF20626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20626_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 5860959 - 5861228
Alignment:
| Q |
1 |
tgagaacttctacttctgtacggaaatttttgtcgtcattgaagatttgaacgattttttgagatttgagatatttatgtcaagtgacactataatttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5860959 |
tgagaacttctacttctgtacggaaatttttgtcgtcattgaagatttgaacgattttttgagatttgagatatttatgtcaagtgacactataatttgt |
5861058 |
T |
|
| Q |
101 |
gataatgcttgatttgtaggctgagcagaaggcaattcacaaggaaaatgatggtaaactacagctgaattggaatcagactagaaacatgccaattacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5861059 |
gataatgcttgatttgtaggctgagcagaaggcaattcacatggaaaatgatggtaaactacagctgaattggaatcagactagaaacatgccaattacc |
5861158 |
T |
|
| Q |
201 |
tataaggtataagcaattaatgcaatatttcaatgtcaactattaaaattaatctcaaactttgttatta |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
5861159 |
tataaggtataagcaattaatgcaatatttcaatgtcaactcttaaaatgaatctcaaactttgttatta |
5861228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 273 - 471
Target Start/End: Original strand, 5861282 - 5861480
Alignment:
| Q |
273 |
cttattcttgttgtgtttattagtaagaatctaagaattgaattttgtggaatttttaaggttgtgttagagagcatgagaatggcaagtgttatatcat |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5861282 |
cttattcttgttgtgtttattagtaagaatctaagaattgaattttgtggaatttttcaggttgtgttagagagcatgagaatggcaagtgttatatcat |
5861381 |
T |
|
| Q |
373 |
ttccatttagagaagcagtagctgatgtagagtacaagggtaagagcaatactttctatatttgcaaaagtatccactatgtaaagtcacagctatttt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5861382 |
ttccatttagagaagcagtagctgatgtagagtacaagggtaagagcaatactttctatatttgcaaaagtatccactatgtaaagtcacagctatttt |
5861480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University