View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20627_high_10 (Length: 208)
Name: NF20627_high_10
Description: NF20627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20627_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 4332843 - 4333017
Alignment:
| Q |
17 |
aaaataattaaaaaagcattacaactttatttttcataaactagtcctctaaatctttgagaaccccacttggtgattgtccaagtttgtgaaaaattgt |
116 |
Q |
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| T |
4332843 |
aaaataattaaaaaagcattacaactttatttttcataaactattcctctagatctttgagaaccccacttggtgattgtccaagtttgtggaaaattgt |
4332942 |
T |
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| Q |
117 |
tgtttacactattcagaaggttaagaaacaccataaaataacaattttaacgtcaatttttatcagcagttaatt |
191 |
Q |
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| T |
4332943 |
tgtttacactattcagaaggctaagaaacaccattaaataacaaatttaacgtcaattttcatcggtagttaatt |
4333017 |
T |
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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 24122581 - 24122514
Alignment:
| Q |
109 |
aaaattgttgtttacactattcagaaggttaagaaacaccataaaataacaattttaacgtcaatttt |
176 |
Q |
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| T |
24122581 |
aaaattgatgtttacacttttcataaggttaagaaacaccataaaataacaaatttaatctcaatttt |
24122514 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 44686412 - 44686329
Alignment:
| Q |
109 |
aaaattgttgtttacactattcagaaggttaagaaa-caccataaaataacaattttaacgtcaatttttatcagcagttaatt |
191 |
Q |
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| T |
44686412 |
aaaattgttgtttacactcttgtgaaggctaaaaaaacaccataaaataacaaatttaactccaattttcttcggcagttaatt |
44686329 |
T |
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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 28650954 - 28651036
Alignment:
| Q |
109 |
aaaattgttgtttacactattcagaaggttaagaaacaccataaaataacaattttaacgtcaatttttatcagcagttaatt |
191 |
Q |
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| T |
28650954 |
aaaattgttgtttacactacaaacaaagctaagaaagaccataaaatagtaaatttaacctcaattttcatcagcaattaatt |
28651036 |
T |
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 38283866 - 38283934
Alignment:
| Q |
109 |
aaaattgttgtttacactattcagaaggttaagaaacaccataaaataacaattttaacgtcaattttt |
177 |
Q |
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| T |
38283866 |
aaaattgttgtttacactcttaaaaaggttaagaaacaccataaaatgacaaacttaacctcaattttt |
38283934 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 42940843 - 42940776
Alignment:
| Q |
108 |
aaaaattgttgtttacactattcagaaggttaagaaacaccataaaataacaattttaacgtcaattt |
175 |
Q |
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| T |
42940843 |
aaaaattgctgtttacactttgcacaaggataagaaacaccatgaaataacaaatttaacttcaattt |
42940776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 5038245 - 5038312
Alignment:
| Q |
107 |
gaaaaattgttgtttacactattcagaaggttaagaaacaccataaaataacaattttaacgtcaatt |
174 |
Q |
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| T |
5038245 |
gaaaaattgttgtttacactttgcacaaagttaagaaacaccatgaaatgaaaaatttaacttcaatt |
5038312 |
T |
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