View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20627_high_5 (Length: 434)
Name: NF20627_high_5
Description: NF20627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20627_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 39502080 - 39502491
Alignment:
| Q |
9 |
gagatgaacttgattatcgaagaagagttggaggtacctgccatggctttttgttatcatctagcacaagtattatggttttaaactacggtcgctgaaa |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39502080 |
gagaggaacttgattatcgaagaagagttggaggtacctgccatggctttttgttatcatctaacacaagtattatggttttaaactacggtcgctgaaa |
39502179 |
T |
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| Q |
109 |
ttgcacttacatgtacttcaacatccttcatactgcgagcgcaattgtggttgcatcctcgatttagaaccatgattcgtatgctattcccttcgtttat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39502180 |
ttgcacttacatgtacttcaacatccttcatactgcgagcgcaattgtggttgcatcctcgatttagaaccatgatttgtatgctattcccttcgtttat |
39502279 |
T |
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| Q |
209 |
gattgcaagatgctttgacattttttatttgtattaagaaaaattggtagtataattaatatatataaattgcatatgaaaattggattttatggctgca |
308 |
Q |
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| T |
39502280 |
gattacaagatgctttgacattttttatttgtagtaagaaaaattggtagtgtaattaatatatataaattgcatatgaaaattggattttatggctgca |
39502379 |
T |
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| Q |
309 |
tccacatccaaattaagctcgctcttggagctttatatcacaacacattcaagatctttattgaagttgtattggaatttcacattgatcatgtttcctt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |
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| T |
39502380 |
tccacatccaaattaagctcgctcttggagctttatatcacaacacattcaagatctttattgaaattgtattggaatctcacattgatcatgtttccat |
39502479 |
T |
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| Q |
409 |
ggatgtataaat |
420 |
Q |
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| T |
39502480 |
ggatgtataaat |
39502491 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 24352616 - 24352649
Alignment:
| Q |
242 |
ttaagaaaaattggtagtataattaatatatata |
275 |
Q |
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| T |
24352616 |
ttaagaaaaattggtagtataattaatacatata |
24352649 |
T |
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