View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20627_low_11 (Length: 261)
Name: NF20627_low_11
Description: NF20627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20627_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 27085282 - 27085035
Alignment:
| Q |
1 |
ttaacaattgatatattaataaatttatatccaaagaataaatttatgatcttatacaacaaatatattttaaaatatcttataatcacagctgagccga |
100 |
Q |
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| T |
27085282 |
ttaacaattggtatattaataaatttatatccaaagaataaatttatgatcttatacaacaaatatattt-aaaatatcttataatcacagctgagccga |
27085184 |
T |
|
| Q |
101 |
taaatctgagactaaaagcaagcctcgtcaattttgacataatctttgacaattgtcaaaatatatctaattgttttgctttaggttgttgtgaaagagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
27085183 |
taaatctgagactaaaagcaagcctcgtcaattttgacataatctttgacaattgtcaaa--atatctaattgttttgctttagattgttgtgaaagagt |
27085086 |
T |
|
| Q |
201 |
ttggtgaatggattggttgttgtctgctacatttaattaatttggtctctg |
251 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
27085085 |
ttggtgaatagattggttgttgtctgctacatttaattaatttggtttctg |
27085035 |
T |
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