View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20627_low_2 (Length: 948)
Name: NF20627_low_2
Description: NF20627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20627_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 818; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 21 - 903
Target Start/End: Complemental strand, 35536860 - 35535978
Alignment:
| Q |
21 |
atgtatttgcataagctnnnnnnntaagccaatccaaaagggctgcaagtcaatacaataatgtcgagtttctagactttataatttttgctgctactta |
120 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35536860 |
atgtatttgcataagctaaaaaaataagtcaatccaaaagggctgcaagtcaatacaataatgtcgagtttctagactttataatttttgctgctactta |
35536761 |
T |
|
| Q |
121 |
ctagccttcattcttagtttttatattgtctattggttaatgtcattctttatcaactaagtgttggaattgccagccgtggcgcctcagtggccataac |
220 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35536760 |
ctcgccttcattcttagtttttatactgtctattggttaatgtcattctttatcaactaagtgttggaattgccggccgtggcgcctcagtggccataac |
35536661 |
T |
|
| Q |
221 |
caatttttgaagggacgttctccatggcataggcctaggccgcattggtgcgtttatcaacgctgtctattgccaatcgtggaaaataggcgttggttca |
320 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35536660 |
caatttttgaagggacgttctccatggcgtaggcctaggccgcattggtgcgtttatcaacgctgtctattgccaatcgtggaaaataggcgtttgttca |
35536561 |
T |
|
| Q |
321 |
aattccgctagtaactgtgcgataacaccgctagagtggctagttccccgtacaaattagcgtatcttagaacaatagcaatttgttcaaattttgatat |
420 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35536560 |
aattccgctagtaactgtgcgataacaccgccagagtggctagttccctgtacaaattagcgtatcttagaacaatagcaatttgttcaaatttcgatat |
35536461 |
T |
|
| Q |
421 |
gaaatgggggaagacataagttatcaagtttcattaggtttaaagggtttaaagcctttgtttgattttacctccttgctactacagatagaatgctgat |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35536460 |
gaaatgggggaagacataagttatcaagtttcattaggtttaaagggtttaaagcctttgtttgattttacctccttgctactacagatagaatgctgat |
35536361 |
T |
|
| Q |
521 |
tcaatccttatttgtttacttttttggttttgatagccattctttgtgctacataaagcttcacctaggagaaaagatagaacatcagcaggacagggaa |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35536360 |
tcaatccttatttgtttacttttttggttttgatagccattctttgtgctacataaagcttcacctaggagaaaagatagaacatcagcaggacagggaa |
35536261 |
T |
|
| Q |
621 |
aatctcgcaaaagaaataagttatctcctcgattgccacagagtgcaaagaaacaggaagaaagtacagatgaagagtgtgatcgctatttgtctcagca |
720 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35536260 |
aatctcgcaaaagaaataagttatctcctcgattgccacatagtgcaaagaaacaggaagaaagtacagatgaagagtgtgatcgctatttgtgtcagca |
35536161 |
T |
|
| Q |
721 |
acagcagattgaagcttttgatattgtttggacaaaaattgaatctactattaaggtcatctaaatatcttctcccatgtcatgtaacttacattggttt |
820 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35536160 |
acagcagattgaagcttttgatattgtttggacaaaaattgaatctactattaaggtcatctaaatatcttctcccatgtcatgtaacttacattggttt |
35536061 |
T |
|
| Q |
821 |
tggccgtatattcctataagaactagaatttatcgaatagccctctttctattgtaggatgtcctgagagagctcaatgctag |
903 |
Q |
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| T |
35536060 |
tggccgtatattcctataagaactagaatttatcgaatagccctctttctattgtaggatgtcctgagagagctcaatgctag |
35535978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 896 - 948
Target Start/End: Original strand, 35535905 - 35535957
Alignment:
| Q |
896 |
aatgctaggttctccaaccaatctagtagtattgaagcactcctgaacccatt |
948 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35535905 |
aatgctaggttctccaaccaatctagtagtattgaagcactcctgaacccatt |
35535957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 413
Target Start/End: Complemental strand, 43832370 - 43832341
Alignment:
| Q |
384 |
atcttagaacaatagcaatttgttcaaatt |
413 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43832370 |
atcttagaacaatagcaatttgttcaaatt |
43832341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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