View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20627_low_4 (Length: 612)
Name: NF20627_low_4
Description: NF20627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20627_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 23 - 603
Target Start/End: Complemental strand, 41630669 - 41630104
Alignment:
| Q |
23 |
gatctatcaattaaacataatgaaatattctccatacatnnnnnnnttaaaataaaccaatctacctaattacccaatcccaacaaattaacagctaata |
122 |
Q |
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| T |
41630669 |
gatctatcaattaaacataatgaaatattctccatacataaaaaaattaaaataaaccaatctacctaattacccaatcccaacaaattaacagctaata |
41630570 |
T |
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| Q |
123 |
attaattaaccaatattaattattccat------agccacacaattaggcatcagaaacaacactaagatcatcttcttcttcaagtggagctggcatat |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41630569 |
attaattaaccaatattaattattccatttccatagccacacaattaggcatcagaaacaacactaagatcatcttcttcttcaagtggagctggcatat |
41630470 |
T |
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| Q |
217 |
tgagatctatgaaactctctttgaatctagcagcagtaggattaacattaacattaacattaacgttaacattagcagtggaagttgatgaagaagggat |
316 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41630469 |
tgagatctatgaaactgtctttgaatctagcagcagtaggattaacattaaca------------------ttagcagtggaagttgatgaagaagggat |
41630388 |
T |
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| Q |
317 |
catgagatgagatctcttgtgaccaccaagtgcttgaccagaaccaaaaaccttaaaacaaaatggacattcaaaaatcttatcatcgttaccattacca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41630387 |
catgagatgagatctcttgtgaccaccaagtgcttgaccagaaccaaaaaccttaaaacaaaatggacattcaaaaatcttatcatcgttaccattacca |
41630288 |
T |
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| Q |
417 |
ttcttcttcgcttcatcgcgacaacaaatacttctatgacttcccaatgctctagaagatcgaaatgttttcccacaattttcgcataaatgcttcccac |
516 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41630287 |
ttcttc---gcttcatcgcgacaacaaatacttctatgacttcccaatgctctagaagatcgaaatgttttcccacaattttcgcataaatgcttcccac |
41630191 |
T |
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| Q |
517 |
gaactcgtttcaataacttcaccttcgatattttctccaccgatccctcatcttcttcttgttccacattgttgtcgttgttcatct |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41630190 |
gaactcgtttcaataacttcaccttcgatattttctccaccgatccctcatcttcttcttgttccacattgttgacgttgttcatct |
41630104 |
T |
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