View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20627_low_8 (Length: 433)
Name: NF20627_low_8
Description: NF20627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20627_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 32597922 - 32597505
Alignment:
| Q |
7 |
cttctttcttctattcctctgaattcgtttttcttagtttaagatacatattcaacttatgaggagcacgcaaccactaggaatgaatttggaagattgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
32597922 |
cttctttcttctattcctctgaattcgtttttcttagtgtaagatacatattcaactgatgaggagcatgcaaccactaggaatgaatttggaagattgt |
32597823 |
T |
|
| Q |
107 |
gaaacctttttctgtcagctaacttctttcttttatttcctatgaatttgtttttcctaaaaaacatggatc-ttttattttctgattgtttcattcttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
32597822 |
gaaacctttttctgtcagctaacttctttcttttatttcctatgaatttgtttttcctaaaaaacatggatctttttatttcctgattgtttcattcttg |
32597723 |
T |
|
| Q |
206 |
caaatttgcaccaaagctttagtagattctgcataaaagagaacaaatgcagaattgagcaatgatttatgtatagaatggataggaaaaataatatagt |
305 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32597722 |
cagatttgcaccaaagctttagtagattctgcataaaagagaacaaatgcagaattgagcaatgatttatgtatagaatggataggaaaaata--atagt |
32597625 |
T |
|
| Q |
306 |
ctaacctcaatataggaccttagatactgaccaaaataattgctaaatagctacacgtttgagtcatgatttgcagattcccacatttgcatttccttat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32597624 |
ctaacctcaatataggaccttagatactgaccaaaataattgctaaatagctacacgtttgagtcatgatatgcagattcccacatttgcatttccttat |
32597525 |
T |
|
| Q |
406 |
aagctctaatatcttcttct |
425 |
Q |
| |
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|||||||||||||||||||| |
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| T |
32597524 |
aagctctaatatcttcttct |
32597505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 32598120 - 32598064
Alignment:
| Q |
7 |
cttctttcttctattcctctgaattcgtttttcttagtttaagatacatattcaact |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32598120 |
cttctttcttctattcctctgaattcgtttttcttagtgtaagatacatattcaact |
32598064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 32614045 - 32613933
Alignment:
| Q |
184 |
ttttctgattgtttcattcttgcaaatttgcaccaaagctttagtagattctgcataaaagagaacaaatgcagaattgagcaatgatttatgtatagaa |
283 |
Q |
| |
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||||||| | |||||||||||||| ||||||| |||||| |||| |||| |||||||||| ||||||||||| |||||||||| ||||||||| ||| |
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| T |
32614045 |
ttttctgctagtttcattcttgcagatttgcagcaaagccttag---attcggcataaaaga--acaaatgcagatttgagcaatgttttatgtatggaa |
32613951 |
T |
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| Q |
284 |
tggataggaaaaataata |
301 |
Q |
| |
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|| ||||||||||||||| |
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| T |
32613950 |
tgaataggaaaaataata |
32613933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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