View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20627_low_9 (Length: 346)
Name: NF20627_low_9
Description: NF20627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20627_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 6013912 - 6014232
Alignment:
| Q |
12 |
atgaacgtatcttcaaaactttccttaatcttccacacacccaaaaaccattcacctcttttcaaattctcaaccttaatttctaccacaccacaaaacc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6013912 |
atgaacgtatcttcaaaactttccttaatcttccacacacccaaaaaccattcacctcttttcaaattctcaaccttaatttctaccacaccacaaaacc |
6014011 |
T |
|
| Q |
112 |
caacaccgcacattctcacaaaatgcattgctctcttacaacactgtgcctcatccaaacaaaaactaaaacaaatccacgcattttccatacgtcacaa |
211 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6014012 |
catcaccgcacattctcacaaaatgcattgctctcttacaaaactgtgcctcatccaaacaaaaactaaaacaaatccacgcattttccatacgtcacaa |
6014111 |
T |
|
| Q |
212 |
tgtcccactcaacaaccccgacatcggaaaataccttattttcaccattgtttccctctcagcaccaatgtcctacgctcacaacgttttcacattgtta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6014112 |
tgtcccactcaacaaccccgacatcggaaaataccttattttcaccattgtttccctctcagcaccaatgtcctacgctcacaacgttttcacattgtta |
6014211 |
T |
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| Q |
312 |
tataacccaaatgtttttact |
332 |
Q |
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||||||||||||||||||||| |
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| T |
6014212 |
tataacccaaatgtttttact |
6014232 |
T |
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