View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_high_18 (Length: 339)
Name: NF20628_high_18
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_high_18 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 40807505 - 40807837
Alignment:
| Q |
14 |
gaatcgttgtgaccatcttatttatatgccccctacagtaacagtaacttggctgtttcttggaagcaccgtatgtcgataattcagtttaatatcatcc |
113 |
Q |
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| T |
40807505 |
gaatcgttgtgaccatcttatttatatgccc--tacagtaacagtaacttggctgtttcttggaagcaccatatgtcgataattcagtttaatatcatcc |
40807602 |
T |
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| Q |
114 |
atcccactcgtggataaattaatatatccactgttctttcaacaagctgcttcttct---------tctttttaccgtttatttataaattaatatatcc |
204 |
Q |
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| T |
40807603 |
atcccactcgtggataaattaatatatcccctgatctttcaacaagcttctccttctccttctccttcttcttactgtttatttataaattaatatatcc |
40807702 |
T |
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| Q |
205 |
tcaggtgcatagctggagactaactgagatcaatttaaggaatttacatatctcaacagcgaacaggtgctttcctaaaatgcactggctagagatttaa |
304 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40807703 |
tcatgtgcatagctggagactaactgagatcaatttaaggaatttacatatctcaacagccaacaggtgctttcctaaaatgcactggctagagatttaa |
40807802 |
T |
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| Q |
305 |
cctccaaccaaatgattaaaaaatacttaaaacca |
339 |
Q |
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| T |
40807803 |
cctccaaccaaatgattaaaaaatacttaaaacca |
40807837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 7122 - 6791
Alignment:
| Q |
14 |
gaatcgttgtgaccatcttatttatatgccccctacagtaacagtaacttggctgtttcttggaagcaccgtatgtcgataattcagtttaatatcatcc |
113 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7122 |
gaatcgttgtgaccatcttatttatatgccc--tacagtaacagtaacttggctgtttcttggaagcaccatatgtcgataattcagtttaatatcatcc |
7025 |
T |
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| Q |
114 |
atcccactcgtggataaattaatatatccactgttctttcaacaagctgcttcttct---------tctttttaccgtttatttataaattaatatatcc |
204 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||| || ||||| |||| |||| |||||||||||||||||||||||| |
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| T |
7024 |
atcccactcgtggataaattaatatatcccctgatctttcaacaagcttctccttctccttctccttcttcttactgtttatttataaattaatatatcc |
6925 |
T |
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| Q |
205 |
tcaggtgcatagctggagactaactgagatcaattt-aaggaatttacatatctcaacagcgaacaggtgctttcctaaaatgcactggctagagattta |
303 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6924 |
tcatgtgcatagctggagactaactgagatcaattttaaggaatttacatatctcaacagccaacaggtgctttcctaaaatgcactggctagagattta |
6825 |
T |
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| Q |
304 |
acctccaaccaaatgattaaaaaatacttaaaacca |
339 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
6824 |
acctccaac--aatgattaaaaaatacttaaaacca |
6791 |
T |
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