View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20628_high_35 (Length: 234)

Name: NF20628_high_35
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20628_high_35
NF20628_high_35
[»] chr7 (35 HSPs)
chr7 (18-234)||(37966757-37966978)
chr7 (106-234)||(46633567-46633701)
chr7 (169-234)||(11250560-11250626)
chr7 (106-234)||(11321976-11322110)
chr7 (169-234)||(26994316-26994382)
chr7 (111-234)||(36769660-36769789)
chr7 (190-234)||(15035344-15035388)
chr7 (170-234)||(26652806-26652870)
chr7 (159-234)||(34117381-34117456)
chr7 (169-234)||(3922794-3922860)
chr7 (169-234)||(21784809-21784875)
chr7 (169-234)||(47947698-47947764)
chr7 (169-234)||(47953128-47953194)
chr7 (169-234)||(329409-329474)
chr7 (111-234)||(10932648-10932777)
chr7 (169-234)||(43214016-43214081)
chr7 (169-234)||(48445460-48445525)
chr7 (190-234)||(1363597-1363641)
chr7 (190-234)||(9913485-9913529)
chr7 (190-234)||(9927173-9927217)
chr7 (170-234)||(34295495-34295559)
chr7 (170-234)||(43368141-43368205)
chr7 (111-234)||(48894593-48894721)
chr7 (195-234)||(26371900-26371939)
chr7 (169-234)||(18470622-18470688)
chr7 (113-226)||(26910507-26910624)
chr7 (169-234)||(32873860-32873926)
chr7 (169-234)||(40753093-40753159)
chr7 (169-234)||(41211292-41211358)
chr7 (169-234)||(43158777-43158843)
chr7 (192-234)||(44668769-44668811)
chr7 (190-227)||(41665673-41665710)
chr7 (111-160)||(43189414-43189463)
chr7 (169-228)||(12982241-12982301)
chr7 (190-234)||(29372870-29372914)
[»] chr4 (42 HSPs)
chr4 (118-234)||(55065416-55065537)
chr4 (111-234)||(29592775-29592898)
chr4 (118-234)||(37931802-37931923)
chr4 (111-234)||(7555040-7555168)
chr4 (109-234)||(21579898-21580029)
chr4 (172-234)||(44324425-44324487)
chr4 (110-234)||(49152182-49152312)
chr4 (169-234)||(11055980-11056045)
chr4 (111-234)||(9807031-9807159)
chr4 (170-234)||(37695624-37695688)
chr4 (165-234)||(2725215-2725285)
chr4 (169-234)||(6776515-6776581)
chr4 (169-234)||(29785620-29785686)
chr4 (169-234)||(43641036-43641102)
chr4 (172-234)||(53200727-53200789)
chr4 (111-234)||(38486340-38486464)
chr4 (170-234)||(47642574-47642638)
chr4 (170-234)||(50178576-50178640)
chr4 (176-234)||(50727996-50728055)
chr4 (169-216)||(50729627-50729674)
chr4 (176-234)||(50736010-50736069)
chr4 (169-227)||(3649574-3649632)
chr4 (169-234)||(14296534-14296600)
chr4 (169-234)||(14314782-14314848)
chr4 (169-234)||(23521817-23521883)
chr4 (169-234)||(24002275-24002341)
chr4 (169-234)||(24210255-24210321)
chr4 (190-231)||(41711806-41711847)
chr4 (111-233)||(37865627-37865755)
chr4 (169-227)||(20518112-20518171)
chr4 (191-234)||(32858283-32858326)
chr4 (195-234)||(53343560-53343599)
chr4 (169-234)||(20802614-20802680)
chr4 (169-234)||(33552925-33552991)
chr4 (169-234)||(34929852-34929918)
chr4 (169-230)||(47361496-47361558)
chr4 (169-234)||(7001792-7001857)
chr4 (111-227)||(20694250-20694367)
chr4 (169-234)||(39078599-39078664)
chr4 (190-234)||(22318467-22318511)
chr4 (190-234)||(50186487-50186531)
chr4 (170-234)||(52949660-52949723)
[»] chr3 (32 HSPs)
chr3 (118-234)||(51925292-51925413)
chr3 (169-234)||(34026602-34026668)
chr3 (119-234)||(12349255-12349376)
chr3 (177-234)||(41694985-41695042)
chr3 (111-234)||(21373812-21373931)
chr3 (169-234)||(42636487-42636553)
chr3 (169-234)||(53046725-53046791)
chr3 (111-234)||(53557879-53558008)
chr3 (118-234)||(3867733-3867849)
chr3 (170-234)||(10747154-10747218)
chr3 (170-234)||(31883106-31883170)
chr3 (169-234)||(54622880-54622942)
chr3 (169-234)||(26282471-26282537)
chr3 (169-234)||(28675725-28675791)
chr3 (169-234)||(44116874-44116940)
chr3 (190-234)||(29646022-29646067)
chr3 (170-234)||(47958516-47958581)
chr3 (112-227)||(22484834-22484954)
chr3 (190-234)||(33364862-33364906)
chr3 (190-234)||(44267699-44267743)
chr3 (170-234)||(50386540-50386604)
chr3 (195-234)||(5442253-5442292)
chr3 (195-234)||(43175531-43175570)
chr3 (169-234)||(2135005-2135071)
chr3 (169-234)||(4851540-4851606)
chr3 (169-234)||(20609732-20609798)
chr3 (169-234)||(51259864-51259930)
chr3 (196-234)||(51296544-51296582)
chr3 (170-234)||(3964225-3964290)
chr3 (173-234)||(28625003-28625064)
chr3 (190-234)||(25954408-25954452)
chr3 (190-234)||(44000218-44000262)
[»] scaffold0025 (1 HSPs)
scaffold0025 (169-234)||(5536-5601)
[»] chr8 (31 HSPs)
chr8 (111-234)||(3251761-3251890)
chr8 (170-234)||(22999193-22999257)
chr8 (118-234)||(37618497-37618618)
chr8 (118-234)||(40388919-40389040)
chr8 (111-234)||(41709648-41709777)
chr8 (170-234)||(7591552-7591616)
chr8 (169-234)||(6386510-6386576)
chr8 (172-234)||(16485914-16485976)
chr8 (111-234)||(31513688-31513817)
chr8 (111-234)||(34101379-34101508)
chr8 (111-234)||(45446326-45446455)
chr8 (170-234)||(10467000-10467064)
chr8 (170-234)||(41548554-41548618)
chr8 (169-227)||(29611167-29611225)
chr8 (110-234)||(31731934-31732064)
chr8 (169-234)||(32020106-32020172)
chr8 (192-232)||(10320384-10320424)
chr8 (190-234)||(10656791-10656835)
chr8 (190-234)||(30501101-30501145)
chr8 (172-234)||(32303690-32303753)
chr8 (191-234)||(32918842-32918885)
chr8 (195-234)||(34063089-34063128)
chr8 (169-234)||(5968969-5969035)
chr8 (169-234)||(8673160-8673226)
chr8 (169-234)||(27103893-27103959)
chr8 (169-234)||(29672428-29672494)
chr8 (169-234)||(30543127-30543193)
chr8 (169-234)||(35225597-35225662)
chr8 (167-234)||(6460196-6460261)
chr8 (190-234)||(37474675-37474719)
chr8 (190-234)||(39642839-39642883)
[»] chr2 (28 HSPs)
chr2 (169-234)||(13829373-13829438)
chr2 (111-234)||(32497786-32497915)
chr2 (111-234)||(33366481-33366610)
chr2 (171-234)||(32766595-32766658)
chr2 (113-234)||(39461187-39461314)
chr2 (169-234)||(5278924-5278990)
chr2 (169-234)||(9733020-9733086)
chr2 (169-234)||(30326421-30326487)
chr2 (169-234)||(33889177-33889243)
chr2 (169-234)||(34338744-34338810)
chr2 (169-234)||(40692239-40692305)
chr2 (111-234)||(44284508-44284629)
chr2 (190-234)||(30712813-30712857)
chr2 (172-234)||(2645176-2645239)
chr2 (176-234)||(19513779-19513838)
chr2 (190-233)||(45463200-45463243)
chr2 (118-234)||(30798579-30798699)
chr2 (169-234)||(3913550-3913615)
chr2 (190-234)||(1247111-1247155)
chr2 (108-234)||(35114653-35114785)
chr2 (169-227)||(6896103-6896161)
chr2 (192-230)||(10399964-10400002)
chr2 (169-234)||(16104208-16104274)
chr2 (169-234)||(17540648-17540714)
chr2 (169-234)||(18685770-18685836)
chr2 (192-232)||(11114830-11114870)
chr2 (190-234)||(20907545-20907589)
chr2 (193-233)||(38623391-38623431)
[»] chr1 (30 HSPs)
chr1 (118-234)||(11772797-11772918)
chr1 (118-234)||(25539743-25539864)
chr1 (169-234)||(26118380-26118446)
chr1 (169-234)||(42510468-42510534)
chr1 (170-234)||(50304596-50304660)
chr1 (169-231)||(24339805-24339868)
chr1 (169-234)||(844889-844955)
chr1 (169-227)||(6029473-6029531)
chr1 (169-234)||(30105845-30105911)
chr1 (118-234)||(35387476-35387598)
chr1 (169-234)||(41972855-41972921)
chr1 (170-234)||(16386798-16386863)
chr1 (111-234)||(16476320-16476448)
chr1 (170-234)||(31004077-31004141)
chr1 (170-234)||(42512935-42512999)
chr1 (113-234)||(16451009-16451136)
chr1 (172-234)||(6144151-6144213)
chr1 (169-234)||(6711211-6711277)
chr1 (169-234)||(12890181-12890247)
chr1 (172-234)||(38663079-38663141)
chr1 (169-234)||(45491040-45491106)
chr1 (169-234)||(15540055-15540120)
chr1 (190-234)||(16704690-16704735)
chr1 (118-226)||(38087169-38087282)
chr1 (190-234)||(16437327-16437371)
chr1 (111-173)||(39281775-39281837)
chr1 (160-234)||(47093007-47093081)
chr1 (169-234)||(51264438-51264504)
chr1 (169-234)||(45658765-45658830)
chr1 (194-234)||(50382568-50382608)
[»] scaffold0729 (1 HSPs)
scaffold0729 (169-234)||(4675-4741)
[»] scaffold0650 (1 HSPs)
scaffold0650 (177-227)||(1746-1796)
[»] scaffold0054 (1 HSPs)
scaffold0054 (169-234)||(23511-23577)
[»] chr6 (22 HSPs)
chr6 (169-234)||(10324240-10324306)
chr6 (111-234)||(10959872-10960000)
chr6 (170-234)||(14808129-14808193)
chr6 (169-234)||(3932936-3933002)
chr6 (169-234)||(17867769-17867835)
chr6 (169-234)||(17877552-17877618)
chr6 (192-234)||(18597287-18597329)
chr6 (169-234)||(24242598-24242664)
chr6 (169-234)||(32132509-32132575)
chr6 (169-234)||(32409981-32410047)
chr6 (169-234)||(14925585-14925650)
chr6 (169-234)||(17443197-17443262)
chr6 (190-230)||(31870233-31870273)
chr6 (176-234)||(34176771-34176830)
chr6 (169-234)||(11212191-11212257)
chr6 (169-234)||(24203297-24203363)
chr6 (172-226)||(32859989-32860043)
chr6 (169-234)||(18057454-18057519)
chr6 (194-234)||(7365347-7365387)
chr6 (190-234)||(10485113-10485157)
chr6 (190-234)||(32614067-32614111)
chr6 (111-147)||(34684207-34684243)
[»] chr5 (22 HSPs)
chr5 (169-234)||(5571738-5571804)
chr5 (169-234)||(29241312-29241378)
chr5 (169-234)||(7770375-7770440)
chr5 (170-227)||(18470531-18470588)
chr5 (170-234)||(3735293-3735357)
chr5 (190-234)||(7725905-7725949)
chr5 (172-234)||(32528652-32528715)
chr5 (169-234)||(22493514-22493580)
chr5 (169-234)||(31770687-31770753)
chr5 (118-227)||(37148677-37148791)
chr5 (118-230)||(4689798-4689915)
chr5 (178-234)||(7208326-7208383)
chr5 (190-234)||(8561077-8561121)
chr5 (111-234)||(21739257-21739381)
chr5 (175-234)||(39788132-39788192)
chr5 (169-231)||(24181723-24181786)
chr5 (169-234)||(4818236-4818302)
chr5 (169-234)||(6284395-6284461)
chr5 (169-227)||(32093084-32093142)
chr5 (192-234)||(35954971-35955013)
chr5 (169-234)||(40182398-40182464)
chr5 (111-147)||(20119642-20119678)
[»] scaffold0014 (1 HSPs)
scaffold0014 (172-234)||(101886-101949)
[»] scaffold0360 (1 HSPs)
scaffold0360 (169-234)||(15473-15539)
[»] scaffold0280 (1 HSPs)
scaffold0280 (190-227)||(13790-13827)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 37966757 - 37966978
Alignment:
Q  18 aggcataagtttaaaaatgttgcattttgtaccactacagttttgaaggaagaccacgaacttgattaaccaaatcaaaacaatgatgacttcgggtgta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |     
T  37966757 aggcataagtttaaaaatgttgcattttgtaccactacagttttgaaggaagaccacgaacttgattaaccaaatcaaaacaatgatgatttcgggtttg 37966856  T
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    |||||||||||||| |||||||| | |||||||||||||||||||||| ||     ||||| |||||| || ||  ||||||||||||||||||||||||    
T  37966857 tttggtttgcaaaatagtaagtactagacataataatataagacataacagcacaacacaaagcagaatagtacataacaaatttttatggtattaaata 37966956  T
Q  213 attttttgttttatacgatttt 234  Q
    ||||||||||||||||||||||    
T  37966957 attttttgttttatacgatttt 37966978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 46633567 - 46633701
Alignment:
Q  106 acttcgggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaa-ttttt 199  Q
    |||| |||||| |||||||||||||| || ||||||||||||||||| || |||| | || ||     |||||||||||||| |||   ||||| |||||    
T  46633567 acttagggtgtgtttggtttgcaaaacagcaagtattggacataatagtacaagatagaacagtacaacacaaggcagaacaacacaagacaaatttttt 46633666  T
Q  200 atggtattaaataattttttgttttatacgatttt 234  Q
    |||| ||| | ||||||||||||||||||||||||    
T  46633667 atggcattgagtaattttttgttttatacgatttt 46633701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 11250560 - 11250626
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttt-tatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | ||||||||| ||||||||| | ||||||||||||||||| ||||||    
T  11250560 cacaaggcagaacagcacaggacaaattttttatggtattgagtaattttttgttttatatgatttt 11250626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 11322110 - 11321976
Alignment:
Q  106 acttcgggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt- 199  Q
    ||||||||||| |||||||||||||| ||||||||| ||||| || | || |||| | || ||     ||||||||||||||| ||   ||||||||||     
T  11322110 acttcgggtgtgtttggtttgcaaaacagtaagtatcggacagaacagtacaagatagaacagtacaacacaaggcagaacagtacatgacaaatttttt 11322011  T
Q  200 atggtattaaataattttttgttttatacgatttt 234  Q
    |||| ||| | ||||||||||||||||||||||||    
T  11322010 atggcattgagtaattttttgttttatacgatttt 11321976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 26994382 - 26994316
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  26994382 cacaaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 26994316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 36769789 - 36769660
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| |||||||| |||||| || | || |||| | || ||     ||||||||||||||||||   |||||||||| ||||     
T  36769789 gggtgtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacatgacaaattttttatggc 36769690  T
Q  205 attaaataattttttgttttatacgatttt 234  Q
    ||| | ||||||||||||||||||||||||    
T  36769689 attgagtaattttttgttttatacgatttt 36769660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 15035388 - 15035344
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| |||||||||||||||| |||||||||    
T  15035388 acaaatttttatggtattgaataattttttgttttgtacgatttt 15035344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 26652806 - 26652870
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||||  | |||||||||||||  ||| ||||||||||||||||||||||||||    
T  26652806 acaagggagaacagcataggacaaatttttatgacattgaataattttttgttttatacgatttt 26652870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 34117381 - 34117456
Alignment:
Q  159 gacataatagcacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||| || ||||| ||||||| |||   |||||||||||||| ||| |||||||||| |||||||||||||||    
T  34117381 gacataacagtacaagacagaacaacacaagacaaatttttatggcattgaataatttttcgttttatacgatttt 34117456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 3922860 - 3922794
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | || |||||||||||||||||||||    
T  3922860 cacaaggcagaacagcacaggacaaattttttatggcattgagtatttttttgttttatacgatttt 3922794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 21784809 - 21784875
Alignment:
Q  169 cacaaggcagaacagcacggaacaaat-ttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| |||||||| |||||||| ||| | ||||||| ||||||||||||||||    
T  21784809 cacaaggcagaacaacacagaacaaatcttttatggcattgagtaattttatgttttatacgatttt 21784875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 47947698 - 47947764
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  47947698 cacaaggcagaacagcacatgacaaattttttatggcattgagtaattttttgttttatacgatttt 47947764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 47953128 - 47953194
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  47953128 cacaaggcagaacagcacatgacaaattttttatggcattgagtaattttttgttttatacgatttt 47953194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 329409 - 329474
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| ||||| ||   |||||||||||||||||| |||||||| |||||||||| ||||||    
T  329409 cacaaggcataacagtacatgacaaatttttatggtattgaataatttcttgttttatatgatttt 329474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 10932777 - 10932648
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaa-----ggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| |||||||| |||||| || | || |||| | || || ||||     ||||||||||||  | |||||||||| ||||     
T  10932777 gggtgtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaacagtacaacacacggcagaacagcataggacaaattttttatggc 10932678  T
Q  205 attaaataattttttgttttatacgatttt 234  Q
    ||| | ||||||||||||||||||||||||    
T  10932677 attgagtaattttttgttttatacgatttt 10932648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 43214081 - 43214016
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||| |||||||||| | |||||||||||||  ||| ||| ||||||||||||||| ||||||    
T  43214081 cacaaggtagaacagcacaggacaaatttttatgacattgaatcattttttgttttataggatttt 43214016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 48445460 - 48445525
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| |||| |||   |||||||||||||||||| |||||||| |||||||||| ||||||    
T  48445460 cacaaggcataacaacacatgacaaatttttatggtattgaataatttcttgttttatatgatttt 48445525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 1363597 - 1363641
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||    
T  1363597 acaaatttttatggcattgaataattttttgttttatacaatttt 1363641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 9913485 - 9913529
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| |||||||||| |||||||||||||||    
T  9913485 acaaatttttatggaattgaataatttttagttttatacgatttt 9913529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 9927173 - 9927217
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| |||||||||| |||||||||||||||    
T  9927173 acaaatttttatggaattgaataatttttagttttatacgatttt 9927217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 34295559 - 34295495
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||||||||   |||||||||||||  ||| ||||||||||||||||||| ||||||    
T  34295559 acaagggagaacagcacaagacaaatttttatgacattgaataattttttgttttatatgatttt 34295495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 43368141 - 43368205
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||||||||   ||||||||||||   ||| ||||||||||||||||||||||||||    
T  43368141 acaagggagaacagcacatgacaaatttttatcacattgaataattttttgttttatacgatttt 43368205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 48894593 - 48894721
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaatttttatggta 205  Q
    |||||| |||||||||||||| ||||| |||| ||||||| | || |||||  || ||     ||||||| | |||||||| | |||| ||||||| | |    
T  48894593 gggtgtgtttggtttgcaaaacagtaaatatttgacataacagtacaagaccgaacagtacaacacaaggtaaaacagcactggacaattttttattgca 48894692  T
Q  206 ttaaataattttttgttttatacgatttt 234  Q
    || ||||||||||||||||||| ||||||    
T  48894693 ttgaataattttttgttttataagatttt 48894721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 26371939 - 26371900
Alignment:
Q  195 tttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  26371939 tttttatggcattgaataattttttgttttatacgatttt 26371900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 18470622 - 18470688
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   |||||||||| |||| ||| | ||||||||||||||||| ||||||    
T  18470622 cacaaggcagaacagcacatgacaaattttttatggcattgagtaattttttgttttatatgatttt 18470688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 26910624 - 26910507
Alignment:
Q  113 gtgtatttggtttgcaaaagagtaagtattggacataataatataaga-----cataatagcacaaggcagaacagcacggaacaaatttttatggtatt 207  Q
    |||| |||||||||||||| |||||||| ||||||||| |||||| ||     ||| ||| ||||||| |||||||| |   ||||||||| ||||||||    
T  26910624 gtgtgtttggtttgcaaaacagtaagtactggacataacaatataggataggacatcataacacaaggtagaacagcgcaagacaaatttt-atggtatt 26910526  T
Q  208 aaataattttttgttttat 226  Q
     ||||||||| || |||||    
T  26910525 gaataattttctgatttat 26910507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 32873926 - 32873860
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| |||   |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  32873926 cacaaggcagaacaacacatgacaaattttttatggcattgagtaattttttgttttatacgatttt 32873860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 40753093 - 40753159
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||| |||||||| ||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  40753093 cacaaagcagaacaacacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 40753159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 41211358 - 41211292
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||  | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  41211358 cacaaggcagaacaacataggacaaattttttatggcattgagtaattttttgttttatacgatttt 41211292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 43158843 - 43158777
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||| || | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  43158843 cacaagacagaacagtacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 43158777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 44668769 - 44668811
Alignment:
Q  192 aaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||| ||||||||||||||||| | ||||||||||||    
T  44668769 aaatttttatagtattaaataattttttatcttatacgatttt 44668811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 41665710 - 41665673
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttata 227  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  41665710 acaaatttttatggtattgaataattttctgttttata 41665673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 43189463 - 43189414
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataaga 160  Q
    |||||| |||||||||||||| |||||||| ||||||||| | |||||||    
T  43189463 gggtgtgtttggtttgcaaaacagtaagtactggacataacagtataaga 43189414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 12982241 - 12982301
Alignment:
Q  169 cacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttatac 228  Q
    ||||||||||||||||||   ||||| ||||||||| ||| | ||||||||||||||||||    
T  12982241 cacaaggcagaacagcacatgacaaaatttttatggcattgagtaattttttgttttatac 12982301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 29372914 - 29372870
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||| ||||||||||||||||||||||| || ||||| ||||||    
T  29372914 acaaacttttatggtattaaataatttttggtcttatatgatttt 29372870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 55065537 - 55065416
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    |||||||||||||| || ||||| ||||||||| | ||||||| | |||||     |||||||||||||||||| | |||||||||||||| ||| | ||    
T  55065537 tttggtttgcaaaacagcaagtactggacataacagtataagataaaatagtacaacacaaggcagaacagcacaggacaaatttttatggcattgagta 55065438  T
Q  213 attttttgttttatacgatttt 234  Q
    ||||||||||||||||||||||    
T  55065437 attttttgttttatacgatttt 55065416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 29592775 - 29592898
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaaggcagaacagcacggaacaaatttttatggtattaaa 210  Q
    |||||| |||||||||||||| ||||| || ||||||||  | || |||||| || | ||||||||||||||| ||   |||||||||| ||| ||| ||    
T  29592775 gggtgtgtttggtttgcaaaacagtaaatactggacatatcagtacaagacagaacaacacaaggcagaacagaacaagacaaatttttttggcattgaa 29592874  T
Q  211 taattttttgttttatacgatttt 234  Q
    ||||||||||||||||| ||||||    
T  29592875 taattttttgttttatatgatttt 29592898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 37931802 - 37931923
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatagca-----caaggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    |||||||||||||| |||||||| ||||||||| | || ||||||||||| ||     ||||||||||||||||   |||| ||||||||| ||| ||||    
T  37931802 tttggtttgcaaaacagtaagtactggacataacagtacaagacataataacataatacaaggcagaacagcacaagacaactttttatggcattgaata 37931901  T
Q  213 attttttgttttatacgatttt 234  Q
    |||||| ||||||||| |||||    
T  37931902 atttttcgttttatacaatttt 37931923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 7555168 - 7555040
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaa-----ggcagaacagcacggaacaaatttttatggta 205  Q
    |||||| |||||||||||||| |||||||||||||| ||| | || |||||| || | |||||     | ||||||| |||   |||||||||||||| |    
T  7555168 gggtgtgtttggtttgcaaaatagtaagtattggacttaacagtacaagacaaaacaacacaacacaagacagaacatcacacgacaaatttttatggca 7555069  T
Q  206 ttaaataattttttgttttatacgatttt 234  Q
    || ||||||||||||||||||||||||||    
T  7555068 ttgaataattttttgttttatacgatttt 7555040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 21579898 - 21580029
Alignment:
Q  109 tcgggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaatttt-tatg 202  Q
    |||||||| |||||||||||||| |||||||| |||||| || | ||||||| | || ||     |||||||||||||| ||| | ||||||||| ||||    
T  21579898 tcgggtgtgtttggtttgcaaaacagtaagtactggacagaacagtataagatagaacagtacaacacaaggcagaacaacacaggacaaattttttatg 21579997  T
Q  203 gtattaaataattttttgttttatacgatttt 234  Q
    ||||| | |||||||| |||||||||||||||    
T  21579998 gtattgagtaatttttagttttatacgatttt 21580029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 44324487 - 44324425
Alignment:
Q  172 aaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||   |||||||||||||| ||| ||||||||||||||||||||||||||    
T  44324487 aaggcagaacagcacatgacaaatttttatggcattgaataattttttgttttatacgatttt 44324425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 49152312 - 49152182
Alignment:
Q  110 cgggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atgg 203  Q
    ||||||| |||||||||||||| || ||||| |||||| || | ||||||| | || ||     |||||||||||||||||| | |||||||||| ||||    
T  49152312 cgggtgtgtttggtttgcaaaacagcaagtactggacagaacagtataagatagaacagtacaacacaaggcagaacagcacaggacaaattttttatgg 49152213  T
Q  204 tattaaataattttttgttttatacgatttt 234  Q
     ||| | ||||||||||||||||||||||||    
T  49152212 cattgagtaattttttgttttatacgatttt 49152182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 11055980 - 11056045
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||| ||||||| |||| |||||| ||||||| ||| ||||||||||||||||||||||||||    
T  11055980 cacaaggtagaacagtacgggacaaatctttatggcattgaataattttttgttttatacgatttt 11056045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 9807031 - 9807159
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaa-----ggcagaacagcacggaacaaatttttatggta 205  Q
    |||||| |||||||||||||| |||||||| |||||| || | || |||| | || |||||||     |||| |||||||| | |||||||| ||||| |    
T  9807031 gggtgtgtttggtttgcaaaatagtaagtactggacagaacagtacaagatagaacagcacaacacaaggcataacagcacaggacaaatttgtatggca 9807130  T
Q  206 ttaaataattttttgttttatacgatttt 234  Q
    || ||||||||| ||||||||||||||||    
T  9807131 ttgaataattttatgttttatacgatttt 9807159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 37695688 - 37695624
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||||||||   |||||||||||||| ||| ||||||||||||||||||||||||||    
T  37695688 acaagggagaacagcacaagacaaatttttatggcattgaataattttttgttttatacgatttt 37695624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 2725285 - 2725215
Alignment:
Q  165 atagcacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||||||| | ||||| ||||||||  ||| | ||||||||||||||||||||||||    
T  2725285 atagcacaaggcagaacagcacaggacaaattttttatgacattgagtaattttttgttttatacgatttt 2725215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 6776515 - 6776581
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  6776515 cacaaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 6776581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 29785686 - 29785620
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  29785686 cacaaggcagaacagcacatgacaaattttttatggcattgaataattttttgttttatacgatttt 29785620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 43641036 - 43641102
Alignment:
Q  169 cacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | ||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  43641036 cacaaggcagaacagcacaggacaaaatttttatggcattgagtaattttttgttttatacgatttt 43641102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 53200789 - 53200727
Alignment:
Q  172 aaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||| ||| |||||||||||||||||||| |||||||||||||||| || ||||||    
T  53200789 aaggcataacaacacagaacaaatttttatggtattgaataattttttgttttgtatgatttt 53200727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 38486464 - 38486340
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaaggcagaacagcacggaacaaa-tttttatggtattaa 209  Q
    |||||| ||| |||||||||| |||||||| | |||| || | |  |||| | || |||||||||||||||||||| | ||||| |||||||||  || |    
T  38486464 gggtgtgtttcgtttgcaaaacagtaagtactagacagaacagtgcaagatagaacagcacaaggcagaacagcacaggacaaattttttatggcgttga 38486365  T
Q  210 ataattttttgttttatacgatttt 234  Q
     |||||||||||||||||| |||||    
T  38486364 gtaattttttgttttatactatttt 38486340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 47642638 - 47642574
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||||| | | |||||||||||  ||| ||||||||||||||||||||||||||    
T  47642638 acaagggagaacagcacaggataaatttttatgacattgaataattttttgttttatacgatttt 47642574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 50178640 - 50178576
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||| ||| | |||||||||||||  ||| ||||||||||||||||||||||||||    
T  50178640 acaagggagaacatcacaggacaaatttttatgacattgaataattttttgttttatacgatttt 50178576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 50728055 - 50727996
Alignment:
Q  176 cagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||| | |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  50728055 cagaacagcactggacaaattttttatggcattgaataattttttgttttatacgatttt 50727996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 50729674 - 50729627
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattt 216  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  50729674 cacaaggcataacagcacagaacaaatttttatgatattaaataattt 50729627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 50736069 - 50736010
Alignment:
Q  176 cagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||| | |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  50736069 cagaacagcactggacaaattttttatggcattgaataattttttgttttatacgatttt 50736010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 3649574 - 3649632
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttata 227  Q
    ||||||||| ||||||||   |||||||||||||||||| |||||||| ||||||||||    
T  3649574 cacaaggcataacagcacatcacaaatttttatggtattgaataatttcttgttttata 3649632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 14296534 - 14296600
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||| |||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  14296534 cacaaagcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 14296600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 14314782 - 14314848
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||| |||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  14314782 cacaaagcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 14314848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 23521817 - 23521883
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  23521817 cacaaggcagaacagcacatgacaaattttttatggcattgagtaattttttgttttatacgatttt 23521883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 24002275 - 24002341
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttat-ggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| | || ||| | ||||||||||||||||||||||||    
T  24002275 cacaaggcagaacagcacaggacaaattttttttggcattgagtaattttttgttttatacgatttt 24002341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 24210255 - 24210321
Alignment:
Q  169 cacaaggcagaacagcacggaacaaat-ttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| |||   |||||| |||||||||||| | ||||||||||||||||||||||||    
T  24210255 cacaaggcagaacaacacatgacaaatattttatggtattgagtaattttttgttttatacgatttt 24210321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 41711806 - 41711847
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgat 231  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  41711806 acaaatttttatgctattgaataattttttgttttatacgat 41711847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 37865627 - 37865755
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| ||||||||  |||||||| | || |||| | || ||     |||||||||||||| |||   |||| ||||| ||||     
T  37865627 gggtgtgtttggtttgcaaaacagtaagtacgggacataacagtacaagatagaacagtacaacacaaggcagaacaacacatgacaatttttttatggc 37865726  T
Q  205 attaaataattttttgttttatacgattt 233  Q
    ||| |||||||||||||||||||||||||    
T  37865727 attgaataattttttgttttatacgattt 37865755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 20518171 - 20518112
Alignment:
Q  169 cacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttata 227  Q
    |||||||||||||||||| | ||||| ||||||||| ||| | |||||||||||||||||    
T  20518171 cacaaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttata 20518112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 32858283 - 32858326
Alignment:
Q  191 caaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||    
T  32858283 caaatttttatagtattgaataattttttgttttatacaatttt 32858326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 53343599 - 53343560
Alignment:
Q  195 tttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  53343599 tttttatggcattgaataattttttgttttatacgatttt 53343560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 20802680 - 20802614
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| | |||||||||| |||| ||| | ||||||||||||||||| ||||||    
T  20802680 cacaaggcagaacaacacaggacaaattttttatggcattgagtaattttttgttttatatgatttt 20802614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 33552991 - 33552925
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| |||| ||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  33552991 cacaaggcaaaacaacacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 33552925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 34929852 - 34929918
Alignment:
Q  169 cacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   ||||| ||||||||| ||| | ||| ||||||||||||||||||||    
T  34929852 cacaaggcagaacagcacatgacaaaatttttatggcattcagtaaatttttgttttatacgatttt 34929918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 47361558 - 47361496
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacga 230  Q
    ||||||||||||||||||   |||||||||| ||| |||| | ||||||||||||||||||||    
T  47361558 cacaaggcagaacagcacatgacaaattttttatgatattgagtaattttttgttttatacga 47361496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 7001792 - 7001857
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||  || | |||||||||||||| ||| |||||||||| || ||||||||||||    
T  7001792 cacaagacagaacaatacaggacaaatttttatggcattgaataatttttggtcttatacgatttt 7001857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 20694250 - 20694367
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaaggcagaacagcacggaacaaatttt-tatggtattaa 209  Q
    |||||| |||||||||||||| |||||||| |||| | || | || |||| | || | |||||||||||| |||||   ||||||||| ||||| | | |    
T  20694250 gggtgtgtttggtttgcaaaacagtaagtaatggatagaacagtacaagatagaacaacacaaggcagaatagcacatgacaaattttgtatggcaatga 20694349  T
Q  210 ataattttttgttttata 227  Q
     |||||||||||||||||    
T  20694350 gtaattttttgttttata 20694367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 39078599 - 39078664
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| |||| ||| | | |||||||||||||||| |||||||| || ||||||| ||||||    
T  39078599 cacaaggcataacaacacaggataaatttttatggtattgaataatttcttattttatatgatttt 39078664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 22318511 - 22318467
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||| |||| |||||||| |||||||||| ||||||    
T  22318511 acaaatttttatgatattgaataatttcttgttttatatgatttt 22318467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 50186487 - 50186531
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||  ||| ||||||||||| ||||||||||||||    
T  50186487 acaaatttttatgacattgaataattttttattttatacgatttt 50186531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 52949660 - 52949723
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||| ||||| | |||||||||||||  ||| ||||| ||||||||||||||||||||    
T  52949660 acaagggagaatagcacaggacaaatttttatgacattgaataa-tttttgttttatacgatttt 52949723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 51925413 - 51925292
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    ||||||||||||||  ||||||| |||| |||| | || ||||||||| ||     ||||||||||||||||||   |||||||||||||| ||| ||||    
T  51925413 tttggtttgcaaaacggtaagtactggatataacagtacaagacataacagcacaacacaaggcagaacagcacatgacaaatttttatggcattgaata 51925314  T
Q  213 attttttgttttatacgatttt 234  Q
    ||||||||||||||||||||||    
T  51925313 attttttgttttatacgatttt 51925292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 34026602 - 34026668
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttt-tatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | ||||||||| ||||||||| | ||||||||||||||||||||||||    
T  34026602 cacaaggcagaacagcacaggacaaattttttatggtattgagtaattttttgttttatacgatttt 34026668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 12349376 - 12349255
Alignment:
Q  119 ttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggtattaaata 212  Q
    |||||||||||||||| ||||||||||||||| | || |||| | || ||     ||||||||||||||||||   |||||||||| |||| ||| | ||    
T  12349376 ttggtttgcaaaagagcaagtattggacataacagtacaagatagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcattgagta 12349277  T
Q  213 attttttgttttatacgatttt 234  Q
    ||||||||||||||||||||||    
T  12349276 attttttgttttatacgatttt 12349255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 41695042 - 41694985
Alignment:
Q  177 agaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||| |||||||||||||||  ||| ||||||||||||||||||||||||||    
T  41695042 agaacagcacagaacaaatttttatgacattgaataattttttgttttatacgatttt 41694985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 21373812 - 21373931
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaaggcagaacagcacggaacaaatttttatggtattaaa 210  Q
    |||||| |||||||||||||| ||||||||||||||| || |||| |||||| || |||||||  || || | ||| | |||||||||||||| ||| ||    
T  21373812 gggtgtgtttggtttgcaaaacagtaagtattggacagaacaatacaagacagaacagcacaa--cacaaga-cacaggacaaatttttatggcattgaa 21373908  T
Q  211 taattttttgttttatacgatttt 234  Q
    ||| ||||| ||||||||||||||    
T  21373909 taa-tttttattttatacgatttt 21373931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 42636553 - 42636487
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||||| ||||||||||||||| ||||||||    
T  42636553 cacaaggcagaacagcacaggacaaattttttatggcattaagtaattttttgttttaaacgatttt 42636487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 53046791 - 53046725
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| |||||||||||| |||| ||| | ||||||||||||||||||||||||    
T  53046791 cacaaggcagaacaacacagaacaaattttttatggcattgagtaattttttgttttatacgatttt 53046725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 53558008 - 53557879
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| |||||||| | |||| || |||| |||  |||| ||     ||||||||||||||||||   |||||||||| ||||     
T  53558008 gggtgtgtttggtttgcaaaacagtaagtacttgacagaacaatacaaggtataacagtacaacacaaggcagaacagcacatgacaaattttttatggc 53557909  T
Q  205 attaaataattttttgttttatacgatttt 234  Q
    ||| | ||||||||||||||||||||||||    
T  53557908 attgagtaattttttgttttatacgatttt 53557879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 3867849 - 3867733
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaaggcagaacagcacggaacaaatttttatggtattaaataatttt 217  Q
    |||||||||||||| |||||||| || |||||| | || ||  || ||  |||||||||| |||| |||   |||| ||||||||||||| ||||||||     
T  3867849 tttggtttgcaaaacagtaagtactgaacataacagtacaatgcagaacggcacaaggcataacaacacatgacaagtttttatggtattgaataatttc 3867750  T
Q  218 ttgttttatacgatttt 234  Q
    |||||||||| ||||||    
T  3867749 ttgttttatatgatttt 3867733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 10747154 - 10747218
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||||||||   |||||||||||||  ||| ||||||||||||||||||||||||||    
T  10747154 acaagggagaacagcacaagacaaatttttatgacattgaataattttttgttttatacgatttt 10747218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 31883170 - 31883106
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||| ||| | |||||||||||||  ||| ||||||||||||||||||||||||||    
T  31883170 acaagggagaacaacacaggacaaatttttatgacattgaataattttttgttttatacgatttt 31883106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 54622942 - 54622880
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||   ||| |||| ||||||||| ||| ||||||||||||||||||||||||||    
T  54622942 cacaaggcagaaca---cgggacaattttttatggcattgaataattttttgttttatacgatttt 54622880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 26282537 - 26282471
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||||||   |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  26282537 cacaagacagaacagcacatgacaaattttttatggcattgaataattttttgttttatacgatttt 26282471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 28675725 - 28675791
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  28675725 cacaaggcagaacaacacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 28675791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 44116874 - 44116940
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  44116874 cacaagtcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 44116940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 29646022 - 29646067
Alignment:
Q  190 acaaatttttatggtattaaataa-ttttttgttttatacgatttt 234  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  29646022 acaaatttttatggcattaaataatttttttgttttatacgatttt 29646067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 47958581 - 47958516
Alignment:
Q  170 acaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||  |||||||||||| |||  ||| | ||||||||||||||||||||||||    
T  47958581 acaaggcagaacagcatagaacaaattttttatgtcattgagtaattttttgttttatacgatttt 47958516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 22484954 - 22484834
Alignment:
Q  112 ggtgtatttggtttgcaaaagagtaagtattggacata-----ataatataagacataatagcacaaggcagaacagcacggaacaaatttttatggtat 206  Q
    ||||| |||||||||||||| |||||||| ||||||||     |||| ||| ||||  | | || |||| ||||||||||   |||||||||||||||||    
T  22484954 ggtgtgtttggtttgcaaaacagtaagtactggacataacagtataagataggacaacacaacataaggtagaacagcacaagacaaatttttatggtat 22484855  T
Q  207 taaataattttttgttttata 227  Q
    | ||||||||| ||| |||||    
T  22484854 tgaataattttctgtattata 22484834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 33364906 - 33364862
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||    
T  33364906 acaaatttttatgacattgaataattttttgttttatacgatttt 33364862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 44267699 - 44267743
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||    
T  44267699 acaaatttttatcgtattcaataattttttgttttatatgatttt 44267743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 50386604 - 50386540
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||||| | ||||||||||||   ||| |||||||||||||||||||| |||||    
T  50386604 acaagggagaacagcacaggacaaatttttatcacattgaataattttttgttttatacaatttt 50386540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 5442253 - 5442292
Alignment:
Q  195 tttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  5442253 tttttatggcattgaataattttttgttttatacgatttt 5442292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 43175531 - 43175570
Alignment:
Q  195 tttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  43175531 tttttatggtattgagtaattttttgttttatacgatttt 43175570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 2135005 - 2135071
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| |||   |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  2135005 cacaaggcagaacaacacaagacaaattttttatggcattgagtaattttttgttttatacgatttt 2135071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 4851606 - 4851540
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||  || | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  4851606 cacaaggcagaacaagacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 4851540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 20609798 - 20609732
Alignment:
Q  169 cacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | ||||| ||||||||  ||| | |||||||||||| |||||||||||    
T  20609798 cacaaggcagaacagcacaggacaaattttttatgacattgagtaattttttgttatatacgatttt 20609732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 51259930 - 51259864
Alignment:
Q  169 cacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   ||||| ||||||||| ||| | ||||||||||||||||| ||||||    
T  51259930 cacaaggcagaacagcacaagacaaaatttttatggcattgagtaattttttgttttatatgatttt 51259864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 51296544 - 51296582
Alignment:
Q  196 ttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  51296544 ttttatggtattgagtaattttttgttttatacgatttt 51296582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 3964225 - 3964290
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttt-tatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||   ||||||||| |||| |||| ||||||||| ||||||||| ||||||    
T  3964225 acaaggcagaacagcacaagacaaattttgtatgatattgaataattttatgttttatatgatttt 3964290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 28625064 - 28625003
Alignment:
Q  173 aggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||| |||   ||||| |||||||||||| ||||||||||||| ||||| ||||||    
T  28625064 aggcagaacaacacaagacaaacttttatggtattgaataattttttgtcttataagatttt 28625003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 25954408 - 25954452
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||| |||| ||||||||||| ||||||||| ||||    
T  25954408 acaaatttttatgatattgaataattttttattttatacgctttt 25954452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 44000218 - 44000262
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||| |||||||||||| |||||||||| || ||||||||||||    
T  44000218 acaaacttttatggtattgaataatttttggtcttatacgatttt 44000262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 5601 - 5536
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||||||  ||| ||||||||||||||||||||||||||    
T  5601 cacaaggcagaacagcacaggacaaatttttatgacattgaataattttttgttttatacgatttt 5536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 3251890 - 3251761
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| ||||||||| ||||| || ||||||||| | || ||     |||||||||||||||||  | |||||||||| ||||     
T  3251890 gggtgtgtttggtttgcaaaacagtaagtatcggacagaacaatataagatagaacagtacaacacaaggcagaacagcataggacaaattttttatggc 3251791  T
Q  205 attaaataattttttgttttatacgatttt 234  Q
    ||| | ||||||||||||||||||||||||    
T  3251790 attgagtaattttttgttttatacgatttt 3251761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 22999193 - 22999257
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||||| |||||||||||||||  ||| ||||||||||||||||||||||||||    
T  22999193 acaagggagaacagcacagaacaaatttttatgacattgaataattttttgttttatacgatttt 22999257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 37618618 - 37618497
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    ||||||||||||||  ||||||| ||||||||| | || || |||||| ||     ||||||||||||||||||   |||||| ||||||| ||| ||||    
T  37618618 tttggtttgcaaaacggtaagtactggacataacagtacaaaacataacagcacaacacaaggcagaacagcacatgacaaatgtttatggcattgaata 37618519  T
Q  213 attttttgttttatacgatttt 234  Q
    |||||||||||||||| |||||    
T  37618518 attttttgttttatacaatttt 37618497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 40388919 - 40389040
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    ||||||||||||||  ||||||| ||||||||| | || ||||||||| ||     |||||||||||||| ||| | | ||| |||||||| ||| ||||    
T  40388919 tttggtttgcaaaatggtaagtactggacataagagtacaagacataacagcacaacacaaggcagaacaacacaggaaaaaattttatggcattgaata 40389018  T
Q  213 attttttgttttatacgatttt 234  Q
    ||||||| ||||||||||||||    
T  40389019 attttttattttatacgatttt 40389040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 41709648 - 41709777
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| |||||||| |||||| || |||| |||| | || ||     |||||||||||||||||| | |||| ||||| ||||     
T  41709648 gggtgtgtttggtttgcaaaacagtaagtactggacagaacaatacaagatagaacagtacaacacaaggcagaacagcacaggacaatttttttatggc 41709747  T
Q  205 attaaataattttttgttttatacgatttt 234  Q
    ||| | ||||||||||||||||||||||||    
T  41709748 attgagtaattttttgttttatacgatttt 41709777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 7591616 - 7591552
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||||| | |||||||||||||  ||| ||||||||||||||||||||||||||    
T  7591616 acaagggagaacagcacaggacaaatttttatgacattgaataattttttgttttatacgatttt 7591552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 6386510 - 6386576
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||  ||||||||||| |||| ||| | ||||||||||||||||||||||||    
T  6386510 cacaaggcagaacagcacaaaacaaattttttatggcattgagtaattttttgttttatacgatttt 6386576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 16485976 - 16485914
Alignment:
Q  172 aaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||| ||| ||||| ||||||    
T  16485976 aaggcagaacagcacaaaacaaatttttatggtattgaataattttctgtattatatgatttt 16485914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 31513817 - 31513688
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| ||||||||||||||| || | || |||| | || ||     |||||||||||||| |||   |||||||||| ||||     
T  31513817 gggtgtgtttggtttgcaaaacagtaagtattggacaaaacagtacaagatagaacagtacaacacaaggcagaacaacacatgacaaattttttatggc 31513718  T
Q  205 attaaataattttttgttttatacgatttt 234  Q
    ||| | ||||||||||||||||||||||||    
T  31513717 attgagtaattttttgttttatacgatttt 31513688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 34101379 - 34101508
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| |||||||| |||||| || | ||||||| | || ||     |||||||||||||| ||| | |||||||||| ||||     
T  34101379 gggtgtgtttggtttgcaaaaaagtaagtactggacaaaacagtataagatagaacagtacaacacaaggcagaacatcacaggacaaattttttatggc 34101478  T
Q  205 attaaataattttttgttttatacgatttt 234  Q
     || | ||||||||||||||||||||||||    
T  34101479 gttgagtaattttttgttttatacgatttt 34101508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 45446326 - 45446455
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| |||||||| |||||| || | || |||| | || ||     ||||||||||||||||||   |||||||||| ||||     
T  45446326 gggtgtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacagcacatgacaaattttttatggc 45446425  T
Q  205 attaaataattttttgttttatacgatttt 234  Q
    ||| | ||||||||||||||||||||||||    
T  45446426 attgagtaattttttgttttatacgatttt 45446455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 10467000 - 10467064
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||||| | |||||||||||||  ||  ||||||||||||||||||||||||||    
T  10467000 acaagggagaacagcacaggacaaatttttatgacatagaataattttttgttttatacgatttt 10467064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 41548554 - 41548618
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||| ||| | |||||||||||||  ||| ||||||||||||||||||||||||||    
T  41548554 acaagggagaacatcacaggacaaatttttatgacattgaataattttttgttttatacgatttt 41548618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 29611225 - 29611167
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttata 227  Q
    ||||||||| |||| ||| | |||||||||||||||||| |||||||| ||||||||||    
T  29611225 cacaaggcataacaacacaggacaaatttttatggtattgaataatttcttgttttata 29611167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 31731934 - 31732064
Alignment:
Q  110 cgggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaa-tttttatgg 203  Q
    ||||||| |||||||||||||| |||||||| |||||| || | ||||||| | || ||     |||||| ||||| |||||   ||||| |||||||||    
T  31731934 cgggtgtgtttggtttgcaaaacagtaagtactggacagaaaagtataagatagaacagtacaacacaagacagaatagcacatgacaaaatttttatgg 31732033  T
Q  204 tattaaataattttttgttttatacgatttt 234  Q
     ||| | ||||||||||||||||||||||||    
T  31732034 cattgagtaattttttgttttatacgatttt 31732064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 32020172 - 32020106
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  32020172 cacaaggcagaacagcacatgacaaattttttatggcattgagtaattttttgttttatacgatttt 32020106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 10320424 - 10320384
Alignment:
Q  192 aaatttttatggtattaaataattttttgttttatacgatt 232  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  10320424 aaatttttatggtattgaataatttttggttttatacgatt 10320384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 10656835 - 10656791
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||||    
T  10656835 acaaatttttatgttattgaataattttttcttttatacgatttt 10656791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 30501101 - 30501145
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||    
T  30501101 acaaatttttatgacattgaataattttttgttttatacgatttt 30501145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 32303753 - 32303690
Alignment:
Q  172 aaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||| ||||||    
T  32303753 aaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatatgatttt 32303690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 32918842 - 32918885
Alignment:
Q  191 caaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||  |||||||||||||||||||||||| |||||    
T  32918842 caaatttttatgacattaaataattttttgttttatacaatttt 32918885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 34063089 - 34063128
Alignment:
Q  195 tttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  34063089 tttttatggcattgaataattttttgttttatacgatttt 34063128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 5969035 - 5968969
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||  | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  5969035 cacaaggcagaacaacataggacaaattttttatggcattgagtaattttttgttttatacgatttt 5968969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 8673226 - 8673160
Alignment:
Q  169 cacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| |||||||| | ||||| ||||||||| ||| | ||||||||||||||||| ||||||    
T  8673226 cacaaggcaaaacagcacaggacaaaatttttatggcattgagtaattttttgttttatatgatttt 8673160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 27103893 - 27103959
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   |||||||||| |||| ||| | ||||||||||||||||| ||||||    
T  27103893 cacaaggcagaacagcacatgacaaattttttatggcattgagtaattttttgttttatatgatttt 27103959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 29672494 - 29672428
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||||| ||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  29672494 cacaagacagaacaacacaggacaaatttttcatggcattgagtaattttttgttttatacgatttt 29672428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 30543193 - 30543127
Alignment:
Q  169 cacaaggcagaacagcacggaacaaat-ttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| | |||||| |||||||| ||| | ||||||| ||||||||||||||||    
T  30543193 cacaaggcagaacaacacaggacaaatattttatggcattgagtaattttatgttttatacgatttt 30543127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 35225597 - 35225662
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||||| |||   |||||||||||||||||| ||||||||  ||||||||| ||||||    
T  35225597 cacaagacagaacaacacaagacaaatttttatggtattgaataatttcctgttttatatgatttt 35225662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 6460196 - 6460261
Alignment:
Q  167 agcacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||||  ||||| | |||||||||||||||||| |||||  |||||| ||||||||||||    
T  6460196 agcacagggcagagtagcacaggacaaatttttatggtattgaataa--ttttgtcttatacgatttt 6460261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 37474675 - 37474719
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||  ||| ||||||||||| ||||||||||||||    
T  37474675 acaaatttttatgacattgaataattttttattttatacgatttt 37474719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 39642839 - 39642883
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||  ||| |||||||||||||||||||| |||||    
T  39642839 acaaatttttatgacattgaataattttttgttttatacaatttt 39642883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 13829373 - 13829438
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  13829373 cacaaggcagaacatcacagaacaaatttttatgatattgaataattttttgttttatatgatttt 13829438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 32497786 - 32497915
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaa-----ggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| |||||||| |||||| || |||| |||| | || || ||||     ||||||||||||| | |||||||||| ||||     
T  32497786 gggtgtgtttggtttgcaaaacagtaagtactggacagaacaatacaagatagaacagtacaacaaaaggcagaacagcacaggacaaattttttatggc 32497885  T
Q  205 attaaataattttttgttttatacgatttt 234  Q
    ||| | ||||||||||||||||||||||||    
T  32497886 attgagtaattttttgttttatacgatttt 32497915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 33366481 - 33366610
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggt 204  Q
    |||||| |||||||||||||| || ||||| |||||| || |||| |||| | || ||     |||||| ||||||||||| | |||||||||| ||||     
T  33366481 gggtgtgtttggtttgcaaaacagcaagtactggacagaacaatacaagatagaacagtacaacacaagtcagaacagcacaggacaaattttttatggc 33366580  T
Q  205 attaaataattttttgttttatacgatttt 234  Q
    ||| ||||||||||||||||||||||||||    
T  33366581 attgaataattttttgttttatacgatttt 33366610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 32766658 - 32766595
Alignment:
Q  171 caaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||| |||||| ||| | |||||||||||||| ||| ||||||||||||||||||||||||||    
T  32766658 caagggagaacaacacaggacaaatttttatggcattgaataattttttgttttatacgatttt 32766595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 39461187 - 39461314
Alignment:
Q  113 gtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggtat 206  Q
    |||| |||||||||||||| |||||||| ||||||||| |||| |||| | || ||     ||||||||||||||||||   |||||||||| |||| ||    
T  39461187 gtgtgtttggtttgcaaaacagtaagtactggacataacaatacaagatagaacagtacaacacaaggcagaacagcacatgacaaattttttatggcat 39461286  T
Q  207 taaataattttttgttttatacgatttt 234  Q
    | | ||||||||| ||||||||||||||    
T  39461287 tgagtaattttttattttatacgatttt 39461314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 5278990 - 5278924
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  5278990 cacaaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 5278924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 9733086 - 9733020
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||| |||| | |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  9733086 cacaaggcagaacggcacaggacaaattttttatggcattgaataattttttgttttatacgatttt 9733020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 30326487 - 30326421
Alignment:
Q  169 cacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | ||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  30326487 cacaaggcagaacagcacaggacaaaatttttatggaattgagtaattttttgttttatacgatttt 30326421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 33889177 - 33889243
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttt-tatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||||||| ||||||    
T  33889177 cacaaggcagaacagcacataacaaattttttatggtattgagtaattttttgttttatatgatttt 33889243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 34338744 - 34338810
Alignment:
Q  169 cacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | ||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  34338744 cacaaggcagaacagcacaggacaaaatttttatggcattgagtaattttttgttttatacgatttt 34338810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 40692239 - 40692305
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| |||||||| | |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  40692239 cacaaggcaaaacagcacaggacaaattttttatggcattgaataattttttgttttatacgatttt 40692305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 44284508 - 44284629
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaaggcagaacagcacggaacaaattttt-atggtattaa 209  Q
    |||||| |||||||||||||| || ||||| |||||| || | || |||| | ||   ||||||||||||||||||   |||||||||| |||| ||| |    
T  44284508 gggtgtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaa---cacaaggcagaacagcacatgacaaattttttatggcattga 44284604  T
Q  210 ataattttttgttttatacgatttt 234  Q
     ||||||||||||||||||||||||    
T  44284605 gtaattttttgttttatacgatttt 44284629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 30712813 - 30712857
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  30712813 acaaatttttatggtattgaataattttttgttttatatgatttt 30712857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 2645239 - 2645176
Alignment:
Q  172 aaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  2645239 aaggcagaacagcactggacaaattttttatggcattgagtaattttttgttttatacgatttt 2645176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 19513838 - 19513779
Alignment:
Q  176 cagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||| |||||||||| |||||||| | ||||||||||||||||| ||||||    
T  19513838 cagaacagcacgggacaaattttttatggtattgagtaattttttgttttatatgatttt 19513779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 45463243 - 45463200
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgattt 233  Q
    |||||||||||| | |||||||||||||||||||||||||||||    
T  45463243 acaaatttttattgcattaaataattttttgttttatacgattt 45463200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 30798699 - 30798579
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatag---cacaaggcagaacagcacggaacaaatttt-tatggtattaaataa 213  Q
    |||||||||||||| || ||||| |||||| || | ||||||| | || ||   || ||| |||||||||||   ||||||||| ||||||||| | |||    
T  30798699 tttggtttgcaaaacagcaagtactggacagaacagtataagatagaacagtaacataagacagaacagcacatgacaaattttgtatggtatttagtaa 30798600  T
Q  214 ttttttgttttatacgatttt 234  Q
    |||||||||||||||||||||    
T  30798599 ttttttgttttatacgatttt 30798579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 3913615 - 3913550
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||  | | |||||||||||| ||| |||||| |||||||||||||||||||    
T  3913615 cacaaggcagaacaacataggataaatttttatggcattgaataatattttgttttatacgatttt 3913550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 1247111 - 1247155
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||||    
T  1247111 acaaatttttatggcattgaataattttttattttatacgatttt 1247155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 35114653 - 35114785
Alignment:
Q  108 ttcgggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-at 201  Q
    ||||||||| |||||||||||||| || ||||| |||||| || | || |||| | || ||     ||||||||||||| |||| | |||||||||| ||    
T  35114653 ttcgggtgtgtttggtttgcaaaacagcaagtactggacagaacagtacaagatagaacagtacaacacaaggcagaacggcacaggacaaattttttat 35114752  T
Q  202 ggtattaaataattttttgttttatacgatttt 234  Q
    || | | | ||||||||||||||||||||||||    
T  35114753 ggcaatgagtaattttttgttttatacgatttt 35114785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 6896103 - 6896161
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttata 227  Q
    ||||||||| |||| |||   |||||||||||||||||| |||||||| ||||||||||    
T  6896103 cacaaggcataacaacacatgacaaatttttatggtattgaataatttcttgttttata 6896161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 10400002 - 10399964
Alignment:
Q  192 aaatttttatggtattaaataattttttgttttatacga 230  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  10400002 aaatttttatggcattgaataattttttgttttatacga 10399964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 16104208 - 16104274
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| |  ||||||||| |||| ||| | ||||||||||||||||||||||||    
T  16104208 cacaaggcagaacaacacagggcaaattttttatggcattgagtaattttttgttttatacgatttt 16104274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 17540648 - 17540714
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   ||| |||||| |||| ||| | ||||||||||||||||||||||||    
T  17540648 cacaaggcagaacagcacatgacatattttttatggcattgagtaattttttgttttatacgatttt 17540714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 18685770 - 18685836
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||||||||| | |||||||||| |||| ||| | ||||||||||||||||| ||||||    
T  18685770 cacaagacagaacagcacaggacaaattttttatggcattgagtaattttttgttttataggatttt 18685836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 11114830 - 11114870
Alignment:
Q  192 aaatttttatggtattaaataattttttgttttatacgatt 232  Q
    |||||||||||| ||| |||||||||| |||||||||||||    
T  11114830 aaatttttatggcattgaataatttttcgttttatacgatt 11114870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 20907545 - 20907589
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||  ||| |||||||||||||||| |||||||||    
T  20907545 acaaatttttatgtcattgaataattttttgttttgtacgatttt 20907589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 38623431 - 38623391
Alignment:
Q  193 aatttttatggtattaaataattttttgttttatacgattt 233  Q
    |||||||||| |||| ||||||||||||||||||| |||||    
T  38623431 aatttttatgatattgaataattttttgttttatatgattt 38623391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 11772918 - 11772797
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacata-----atagcacaaggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    ||||||||||||||  ||||||| ||||||||| | || ||||||||     | | |||||||||||| ||||| | ||||||||||||||| || |||     
T  11772918 tttggtttgcaaaacggtaagtactggacataacagtacaagacataacaacacaacacaaggcagaatagcacaggacaaatttttatggttttgaatt 11772819  T
Q  213 attttttgttttatacgatttt 234  Q
    ||||||||||||||||||||||    
T  11772818 attttttgttttatacgatttt 11772797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 25539743 - 25539864
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    ||||||||||||||  ||||||| ||||||||| | || ||||||||| |      |||||||||||| ||||| | ||||||||||||||  || ||||    
T  25539743 tttggtttgcaaaacggtaagtactggacataacagtacaagacataacaatacaacacaaggcagaatagcacaggacaaatttttatggctttgaata 25539842  T
Q  213 attttttgttttatacgatttt 234  Q
    ||||||||||||||||||||||    
T  25539843 attttttgttttatacgatttt 25539864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 26118446 - 26118380
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  26118446 cacaaggcagaacagcacaggacaaattttttatggcattgaataattttttgttttatacgatttt 26118380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 42510468 - 42510534
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  42510468 cacaaggcagaacagcacaggacaaattttttatggcattgaataattttttgttttatacgatttt 42510534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 50304596 - 50304660
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||||| | |||||||||||||  ||| ||||||||||||||||||||||||||    
T  50304596 acaagggagaacagcacaggacaaatttttatgacattgaataattttttgttttatacgatttt 50304660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 24339868 - 24339805
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgat 231  Q
    |||||||||||||||||| | |||||||||| |||| ||| |||||||||||||||||||||||    
T  24339868 cacaaggcagaacagcacaggacaaattttttatggcattgaataattttttgttttatacgat 24339805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 844955 - 844889
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  844955 cacaaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 844889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 6029531 - 6029473
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttata 227  Q
    ||||||||| |||||||| | |||||||||||||||||| |||||||| ||||||||||    
T  6029531 cacaaggcataacagcacaggacaaatttttatggtattgaataatttcttgttttata 6029473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 30105911 - 30105845
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| | |||||||||| |||| ||||| ||||||||||||||||||||||||    
T  30105911 cacaaggcagaacaacactggacaaattttttatggcattaagtaattttttgttttatacgatttt 30105845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 35387598 - 35387476
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatag-----cacaaggcagaacagcacggaacaaattttt-atggtattaaat 211  Q
    |||||||||||||| || ||||| |||||||||||||| |||| | || ||     ||||||| ||||||||||   |||||||||| |||| ||| | |    
T  35387598 tttggtttgcaaaacagcaagtactggacataataatacaagatagaacagtacaacacaaggtagaacagcacatgacaaattttttatggcattgagt 35387499  T
Q  212 aattttttgttttatacgatttt 234  Q
    |||||||||||||||||||||||    
T  35387498 aattttttgttttatacgatttt 35387476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 41972855 - 41972921
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   |||||||||| |||| ||||| ||||||||||||||||||||||||    
T  41972855 cacaaggcagaacagcacatgacaaattttttatggcattaagtaattttttgttttatacgatttt 41972921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 16386798 - 16386863
Alignment:
Q  170 acaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  16386798 acaaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 16386863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 16476448 - 16476320
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcac-----aaggcagaacagcacggaacaaatttttatggta 205  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||||||||| | || | |||     |||||| |||| |||   |||||||| ||||| |    
T  16476448 gggtgtgtttggtttgcaaaacagtaagtactggacataacaatataagatagaacaacacgacataaggcataacaccacatgacaaatttgtatggca 16476349  T
Q  206 ttaaataattttttgttttatacgatttt 234  Q
    || ||||||||| |||||||||| |||||    
T  16476348 ttgaataattttatgttttatacaatttt 16476320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 31004077 - 31004141
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||| ||| | |||||||||||||| ||| ||||||||||||||||||| ||||||    
T  31004077 acaagggagaacatcacaggacaaatttttatggcattgaataattttttgttttataggatttt 31004141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 42512999 - 42512935
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||||| | ||||||||||||   ||| ||||||||||||||||||||||||||    
T  42512999 acaagggagaacagcacaggacaaatttttatcacattgaataattttttgttttatacgatttt 42512935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 16451009 - 16451136
Alignment:
Q  113 gtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaa-----ggcagaacagcacggaacaaattttt-atggtat 206  Q
    |||| |||||||||||||| |||||||| |||||| || | || |||| | ||||| ||||     ||||||| ||||| | |||||||||| |||| ||    
T  16451009 gtgtgtttggtttgcaaaacagtaagtactggacagaacagtacaagatagaatagtacaacacatggcagaatagcacaggacaaattttttatggcat 16451108  T
Q  207 taaataattttttgttttatacgatttt 234  Q
    | | ||||||||||||||||||||||||    
T  16451109 tgagtaattttttgttttatacgatttt 16451136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 6144213 - 6144151
Alignment:
Q  172 aaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||| |||   |||||||||||||||||| ||||||||| ||||||||| ||||||    
T  6144213 aaggcagaacatcacaagacaaatttttatggtattgaataattttctgttttatatgatttt 6144151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 6711277 - 6711211
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  6711277 cacaaggcagaacagcacaagacaaattttttatggcattgagtaattttttgttttatacgatttt 6711211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 12890181 - 12890247
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | | |||||||| |||| ||| | ||||||||||||||||||||||||    
T  12890181 cacaaggcagaacagcacaggataaattttttatggcattgagtaattttttgttttatacgatttt 12890247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 38663079 - 38663141
Alignment:
Q  172 aaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||| |||||| ||| | |||||||||||||  ||| ||||||||||||||||||||||||||    
T  38663079 aagggagaacaacacaggacaaatttttatgacattgaataattttttgttttatacgatttt 38663141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 45491106 - 45491040
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttt-tatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   ||||||||| ||||| ||| | ||||||||||||||||||||||||    
T  45491106 cacaaggcagaacagcacatgacaaattttgtatggcattgagtaattttttgttttatacgatttt 45491040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 15540120 - 15540055
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| |||| |||   |||| ||||||||||||| ||||||||||||||||||| ||||||    
T  15540120 cacaaggcataacaacacatgacaagtttttatggtattgaataattttttgttttatatgatttt 15540055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 16704690 - 16704735
Alignment:
Q  190 acaaatttttatggtattaaataa-ttttttgttttatacgatttt 234  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  16704690 acaaatttttatggcattaaataaattttttgttttatacgatttt 16704735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 38087282 - 38087169
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaa-----ggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    |||||||||||||| | |||||| ||||||||| | || |||||| || || ||||     ||||||||||||| | |||||||||||||| ||| ||||    
T  38087282 tttggtttgcaaaacattaagtactggacataacagtacaagacagaacagtacaacataaggcagaacagcacaggacaaatttttatggcattgaata 38087183  T
Q  213 attttttgttttat 226  Q
    || ||||| |||||    
T  38087182 atattttgctttat 38087169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 16437327 - 16437371
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||    
T  16437327 acaaatttttatggcattgagtaattttttgttttatacgatttt 16437371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 39281775 - 39281837
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaa 173  Q
    |||||| |||||||||||||| |||||||| |||||| |||| ||||||| | || |||||||    
T  39281775 gggtgtgtttggtttgcaaaacagtaagtactggacagaatagtataagatagaacagcacaa 39281837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 47093081 - 47093007
Alignment:
Q  160 acataatagcacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||| ||| ||||||| |||   ||||||||||||  |||| ||||||||||||  ||||||||||||    
T  47093081 acataatagcataagacagaacaacacatgacaaatttttataatattgaataattttttgccttatacgatttt 47093007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 51264438 - 51264504
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||| ||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  51264438 cacaagacagaatagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 51264504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 45658765 - 45658830
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||| |||||   ||||||||||||||  || ||||||||||||||||||| ||||||    
T  45658765 cacaagacagaatagcacatgacaaatttttatggctttgaataattttttgttttatatgatttt 45658830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 50382608 - 50382568
Alignment:
Q  194 atttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| |||||| |||||||||||| ||||||    
T  50382608 atttttatggtattgaataatattttgttttatatgatttt 50382568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 4741 - 4675
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  4741 cacaaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 4675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 1796 - 1746
Alignment:
Q  177 agaacagcacggaacaaatttttatggtattaaataattttttgttttata 227  Q
    |||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  1796 agaacaacacagaacaaatttttatggtattgaataattttttgttttata 1746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 23511 - 23577
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  23511 cacaaggcagaacagcactggacaaattttttatggcattgagtaattttttgttttatacgatttt 23577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 10324306 - 10324240
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||| |||||||||| |||||||||||| |||| ||| | ||||||||||||||||||||||||    
T  10324306 cacaaggtagaacagcacagaacaaattttttatgggattgagtaattttttgttttatacgatttt 10324240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 10959872 - 10960000
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataata-----gcacaaggcagaacagcacggaacaaatttttatggta 205  Q
    |||||| |||||||||||||| |||||||| |||| | || | || |||||| || |     ||||||||||||||| |||   |||||||||||||| |    
T  10959872 gggtgtgtttggtttgcaaaacagtaagtactggatagaacagtacaagacagaacatcacagcacaaggcagaacaacacatgacaaatttttatggca 10959971  T
Q  206 ttaaataattttttgttttatacgatttt 234  Q
    || ||| || |||||||||||||||||||    
T  10959972 ttgaatgatattttgttttatacgatttt 10960000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 14808193 - 14808129
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||| ||||| | |||||||||||||| ||| |||||||||| |||||||||||||||    
T  14808193 acaagggagaatagcacaggacaaatttttatggaattgaataatttttagttttatacgatttt 14808129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 3933002 - 3932936
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||| || |||||||| | |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  3933002 cacaagacaaaacagcacaggacaaattttttatggcattgaataattttttgttttatacgatttt 3932936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 17867769 - 17867835
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  17867769 cacaaggcagaacaacacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 17867835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 17877552 - 17877618
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  17877552 cacaaggcagaacaacacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 17877618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 18597329 - 18597287
Alignment:
Q  192 aaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  18597329 aaatttttatggtattgaataattttttgttttatatgatttt 18597287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 24242598 - 24242664
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||  ||| | ||||||||||||||||||||||||    
T  24242598 cacaaggcagaacagcacaggacaaattttttatgacattgagtaattttttgttttatacgatttt 24242664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 32132575 - 32132509
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | |||||| |||||||||||||||||    
T  32132575 cacaaggcagaacagcacaggacaaattttttatggcattgagtaatttgttgttttatacgatttt 32132509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 32410047 - 32409981
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||   |||||||||| |||  ||| ||||||||||||||||||||||||||    
T  32410047 cacaaggcagaacagcacatgacaaattttttatgacattgaataattttttgttttatacgatttt 32409981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 14925650 - 14925585
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| |||||||| | |||||||| ||||  ||| ||||||||| ||||||||||||||||    
T  14925650 cacaaggcataacagcacaggacaaatttgtatgacattgaataattttatgttttatacgatttt 14925585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 17443197 - 17443262
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| |||||||| | |||||||| ||||  ||| ||||||||| ||||||||||||||||    
T  17443197 cacaaggcataacagcacaggacaaatttgtatgacattgaataattttatgttttatacgatttt 17443262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 31870273 - 31870233
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacga 230  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  31870273 acaaatttttatggcattgaataattttttgttttatacga 31870233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 34176771 - 34176830
Alignment:
Q  176 cagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  34176771 cagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 34176830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 11212191 - 11212257
Alignment:
Q  169 cacaaggcagaacagcacggaacaaat-ttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||| ||||||||  || | |||||||||||||||| |||||||    
T  11212191 cacaaggcagaacagcacaggacaaatgttttatggccttgagtaattttttgttttattcgatttt 11212257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 24203297 - 24203363
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| |||||||| | |||||||||| |||| ||| | |||||||||||||||||| |||||    
T  24203297 cacaaggcaaaacagcacaggacaaattttttatggcattgagtaattttttgttttatacaatttt 24203363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 32859989 - 32860043
Alignment:
Q  172 aaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttat 226  Q
    |||||||||||||||   |||||||||||||||||| ||||||||| ||| ||||    
T  32859989 aaggcagaacagcacaatacaaatttttatggtattgaataattttctgtattat 32860043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 18057454 - 18057519
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| || ||||| | |||||||| ||||  ||| ||||||||| ||||||||||||||||    
T  18057454 cacaaggcataatagcacaggacaaatttgtatgacattgaataattttatgttttatacgatttt 18057519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 7365347 - 7365387
Alignment:
Q  194 atttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||||||||||||||| || |||||| |||||    
T  7365347 atttttatggtattaaataatttttagtcttataccatttt 7365387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 10485113 - 10485157
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||||  ||| ||||||||||||||||||||||||||    
T  10485113 acaaatatttatgacattgaataattttttgttttatacgatttt 10485157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 32614111 - 32614067
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||| ||||||||||||| ||||||||| || ||||||||||||    
T  32614111 acaaacttttatggtattatataatttttggtcttatacgatttt 32614067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 34684243 - 34684207
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggaca 147  Q
    |||||| |||||||||||||| |||||||||||||||    
T  34684243 gggtgtgtttggtttgcaaaacagtaagtattggaca 34684207  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 5571804 - 5571738
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  5571804 cacaaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 5571738  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 29241312 - 29241378
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  29241312 cacaaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 29241378  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 7770440 - 7770375
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| ||||| ||||| | |||||||||||||  ||| ||||||||||||||||||||||||||    
T  7770440 cacaagacagaatagcacaggacaaatttttatgacattgaataattttttgttttatacgatttt 7770375  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 18470588 - 18470531
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttata 227  Q
    ||||| || |||||||| |||||||||||||||||||| |||||||| ||||||||||    
T  18470588 acaagacataacagcacagaacaaatttttatggtattgaataatttcttgttttata 18470531  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 3735293 - 3735357
Alignment:
Q  170 acaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||| |||||||||  | |||||||||||||  ||| ||||||||||||||||||||||||||    
T  3735293 acaagggagaacagcataggacaaatttttatgacattgaataattttttgttttatacgatttt 3735357  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 7725949 - 7725905
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  7725949 acaaatttttatggaattgaataattttttgttttatacgatttt 7725905  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 32528652 - 32528715
Alignment:
Q  172 aaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||   |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  32528652 aaggcagaacagcacatgacaaattttttatggcattgaataattttttgttttatacgatttt 32528715  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 22493580 - 22493514
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||| |||||||||| |||||||||||| |||| | | | ||||||||||||||||||||||||    
T  22493580 cacaaggtagaacagcacagaacaaattttttatggcaatgagtaattttttgttttatacgatttt 22493514  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 31770753 - 31770687
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | |||||||||| |||| ||| | ||||||||||||||||| ||||||    
T  31770753 cacaaggcagaacagcacaggacaaattttttatggcattgagtaattttttgttttatatgatttt 31770687  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 37148791 - 37148677
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaa-----ggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    |||||||||||||| |||||||| |||||| || | ||||| ||| || |||||||     || | |||||||| | |||||||||||||||||| ||||    
T  37148791 tttggtttgcaaaacagtaagtactggacaaaacagtataatacagaacagcacaacacaaggtataacagcacaggacaaatttttatggtattgaata 37148692  T
Q  213 attttttgttttata 227  Q
    |||| || |||||||    
T  37148691 atttcttattttata 37148677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 4689915 - 4689798
Alignment:
Q  118 tttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaa-----ggcagaacagcacggaacaaatttttatggtattaaata 212  Q
    |||||||||||||| || ||||| ||||||||| | || |||||| || | |||||     ||||||||| |||   |||||||||||||  ||| ||||    
T  4689915 tttggtttgcaaaacagcaagtaatggacataacagtacaagacagaacaacacaacataaggcagaacaacacatgacaaatttttatgacattgaata 4689816  T
Q  213 attttttgttttatacga 230  Q
    ||||||||||||||||||    
T  4689815 attttttgttttatacga 4689798  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 7208383 - 7208326
Alignment:
Q  178 gaacagcacggaacaaat-ttttatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||| |||||| |||||||| ||| | ||||||||||||||||||||||||    
T  7208383 gaacagcacgggacaaatattttatggcattgagtaattttttgttttatacgatttt 7208326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 8561121 - 8561077
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||    
T  8561121 acaaatttttatggcattgattaattttttgttttatacgatttt 8561077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 21739381 - 21739257
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggacataataatataagacataatagcacaaggcagaacagcacggaacaaa-tttttatggtattaa 209  Q
    |||||| |||||||||||||| || ||||| ||||||||| ||||||||| | || || ||||  ||  |||| || | ||||| ||||||||| |||      
T  21739381 gggtgtgtttggtttgcaaaacagcaagtactggacataacaatataagatagaacagtacaacacaagacagaacaggacaaattttttatggcattgt 21739282  T
Q  210 ataattttttgttttatacgatttt 234  Q
     |||||||||||||||||| |||||    
T  21739281 gtaattttttgttttatacaatttt 21739257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 39788132 - 39788192
Alignment:
Q  175 gcagaacagcacggaacaaatttt-tatggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||||||   ||||||||| ||||||||| | ||||||||||||||||||||||||    
T  39788132 gcagaacagcacatgacaaattttttatggtattgagtaattttttgttttatacgatttt 39788192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 24181786 - 24181723
Alignment:
Q  169 cacaaggcagaacagcacggaacaaa-tttttatggtattaaataattttttgttttatacgat 231  Q
    |||||||||||||||||| | ||||| ||||||||| ||| | |||||| ||||||||||||||    
T  24181786 cacaaggcagaacagcacaggacaaattttttatggcattgagtaatttgttgttttatacgat 24181723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 4818302 - 4818236
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||| |||   |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  4818302 cacaaggcagaacaacacaagacaaattttttatggcattgagtaattttttgttttatacgatttt 4818236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 6284461 - 6284395
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||| |||||||   |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  6284461 cacaaggcagtacagcacaagacaaattttttatggcattgagtaattttttgttttatacgatttt 6284395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 32093142 - 32093084
Alignment:
Q  169 cacaaggcagaacagcacggaacaaatttttatggtattaaataattttttgttttata 227  Q
    ||||||||||||||||||   |||||||||||||||||| || | |||| |||||||||    
T  32093142 cacaaggcagaacagcacaacacaaatttttatggtattgaaaatttttatgttttata 32093084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 35954971 - 35955013
Alignment:
Q  192 aaatttttatggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||| ||||||||||||| | ||||||||||    
T  35954971 aaatttttatggtattgaataattttttgtctaatacgatttt 35955013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 40182398 - 40182464
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    ||||||||| ||||||||   |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  40182398 cacaaggcaaaacagcacatgacaaattttttatggcattgagtaattttttgttttatacgatttt 40182464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 20119642 - 20119678
Alignment:
Q  111 gggtgtatttggtttgcaaaagagtaagtattggaca 147  Q
    |||||| |||||||||||||| |||||||||||||||    
T  20119642 gggtgtgtttggtttgcaaaacagtaagtattggaca 20119678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 101886 - 101949
Alignment:
Q  172 aaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||| |||||||||| | |||||||||| |||| ||| | ||||||||||||||||||||||||    
T  101886 aaggtagaacagcacaggacaaattttttatggcattgagtaattttttgttttatacgatttt 101949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 15539 - 15473
Alignment:
Q  169 cacaaggcagaacagcacggaacaaattttt-atggtattaaataattttttgttttatacgatttt 234  Q
    |||||||||||||||||| | | |||||||| |||  ||| | ||||||||||||||||||||||||    
T  15539 cacaaggcagaacagcacaggataaattttttatgacattgagtaattttttgttttatacgatttt 15473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 13827 - 13790
Alignment:
Q  190 acaaatttttatggtattaaataattttttgttttata 227  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  13827 acaaatttttatggtattgaataatttcttgttttata 13790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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