View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_high_6 (Length: 439)
Name: NF20628_high_6
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 12 - 421
Target Start/End: Original strand, 3377278 - 3377687
Alignment:
| Q |
12 |
agaatattgctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagtgccaccattagtca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3377278 |
agaatattgctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagtgccaccattagtca |
3377377 |
T |
|
| Q |
112 |
gcctcaatcggcggaaaaattgtccacatatgaggtgaagcatttctataatctgatagtagtattaatggtatcagttttcctaattcaatctactgat |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3377378 |
gcctcaatcggcggaaaaattgtcaacatatgaggtgaagcatttctataatctgatagtagtattaatggtatcagttttcctaattcaatctactgat |
3377477 |
T |
|
| Q |
212 |
atggagtttaggttaaatagcttgtattcaaatttcatttgcctgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3377478 |
atggagtttaggttaaatagcttgtattcaaatttcatttgcctgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaaat |
3377577 |
T |
|
| Q |
312 |
atatctttatctggctcatccatgccaaacggaagtcgcagtgttggtatgagtgtttctttagctggtttatatggacatgttgttggaggttgcatag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3377578 |
atatctttatctggctcatccatgccaaacggaagtcgcagtgttggtatgagtgtttctttagctggtttatatggacatgttgttggaggttgcgtag |
3377677 |
T |
|
| Q |
412 |
cttgtccatt |
421 |
Q |
| |
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|||||||||| |
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| T |
3377678 |
cttgtccatt |
3377687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 12 - 421
Target Start/End: Original strand, 3372420 - 3372828
Alignment:
| Q |
12 |
agaatattgctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagtgccaccattagtca |
111 |
Q |
| |
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||||| || ||||||| |||||||||| |||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| |
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| T |
3372420 |
agaatgttactatgaaggtaatgtcatcgtgtcggaaagaaccagaagctatatgcattctatctgcaattggagtcatatcaagcgcaaccattagtca |
3372519 |
T |
|
| Q |
112 |
gcctcaatcggcggaaaaattgtccacatatgaggtgaagcatttctataatctgatagtagtattaatggtatcagttttcctaattcaatctactgat |
211 |
Q |
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|||||| ||| | |||||||| ||||||||||||||| ||||||||| ||||| ||||||| ||||||| | ||| ||||||||||||||| |||| | |
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| T |
3372520 |
gcctcactcgtctgaaaaattatccacatatgaggtgcagcatttctgtaatc-gatagtaatattaatagcttcacttttcctaattcaatatactaaa |
3372618 |
T |
|
| Q |
212 |
atggagtttaggttaaatagcttgtattcaaatttcatttgcctgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaaat |
311 |
Q |
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|||||||| | ||| |||| ||||||||| || | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
3372619 |
atggagttaacattatatagtttgtattcatatgttgtttgcctattttgatgtgtttctttaaataatgtaaattgaatttcagggtaaatattgtatt |
3372718 |
T |
|
| Q |
312 |
atatctttatctggctcatccatgccaaacggaagtcgcagtgttggtatgagtgtttctttagctggtttatatggacatgttgttggaggttgcatag |
411 |
Q |
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|||||||||||||| ||| ||||||||||| ||||||| ||| ||| |||||| |||||||| ||| || ||||||||||||||| ||||||| ||| |
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| T |
3372719 |
gtatctttatctggcccattcatgccaaacgaaagtcgcggtggtggcatgagtatttctttaatgggtctagatggacatgttgttgaaggttgcgtag |
3372818 |
T |
|
| Q |
412 |
cttgtccatt |
421 |
Q |
| |
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|| ||||||| |
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| T |
3372819 |
ctggtccatt |
3372828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 3402611 - 3402813
Alignment:
| Q |
21 |
ctatgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcatatcaagtgccaccattagtcagcctcaatc |
120 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | | |||||||| |||||||| |
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| T |
3402611 |
ctatgaagataatgtcattttgtcagcaaggaccagaagctatatgcattctatatgtaaatggagtcatatcaaaagtcgtcattagtcgacctcaatc |
3402710 |
T |
|
| Q |
121 |
ggcggaaaaattgtccacatatgaggtgaagcatttct---ataatctgatagtagtattaatggtatc-agttttcctaattcaatctactgatatgga |
216 |
Q |
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| | || ||| | ||||||||||||||||| ||| | ||||||||||||| |||| ||||| | ||||||||||||||| |||| ||||| | |
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| T |
3402711 |
gtctcgaacattattcacatatgaggtgaagcgtttatctaataatctgatagt----gtaatagtatcaatttttcctaattcaatgtactaatatgaa |
3402806 |
T |
|
| Q |
217 |
gtttagg |
223 |
Q |
| |
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||||||| |
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| T |
3402807 |
gtttagg |
3402813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 3374542 - 3374640
Alignment:
| Q |
58 |
agctatatgcattctatctgcaaatggagtcatatcaagtgccaccattagtcagcctcaatcggcggaaaaattgtccacatatgaggtgaagcattt |
156 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||| |||||||||| || ||||||| | | | || ||| | ||||||||||||||||||||| |
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| T |
3374542 |
agctataagcatcctatctgcaaatggagtcgcatcaagagccaccattaatcggcctcaagcatctggaacattctacacatatgaggtgaagcattt |
3374640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 3374736 - 3374800
Alignment:
| Q |
263 |
tgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaaatatatctttatctggct |
327 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||| |||||| | | |||||||||||||| |
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| T |
3374736 |
tgtgtttctttcaataatgcaaattgaatttcagggtagatatgacattcaatctttatctggct |
3374800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 3402843 - 3402928
Alignment:
| Q |
255 |
tgtttttatgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaaatatatctttatctggctcatccatgccaaa |
340 |
Q |
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||||| | |||| |||||| ||||||| |||||||| |||| |||| |||||||| | | ||||||||||||||| ||||||||| |
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| T |
3402843 |
tgtttctgtgtgattctttcaataatgcaaattgaagttcacggtagatatgaaattcgaactttatctggctcattcatgccaaa |
3402928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 42205929 - 42205997
Alignment:
| Q |
23 |
atgaaagtaatgtcattttgtcagcaaggaccagaagctatatgcattctatctgcaaatggagtcata |
91 |
Q |
| |
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||||| ||||| ||||||| |||||||||||| |||| |||||||||| || |||||||| |||||| |
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| T |
42205929 |
atgaaggtaatttcattttctcagcaaggacctcgagctgtatgcattctttcagcaaatggtgtcata |
42205997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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