View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20628_low_1 (Length: 700)

Name: NF20628_low_1
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20628_low_1
NF20628_low_1
[»] chr7 (6 HSPs)
chr7 (11-192)||(6203912-6204093)
chr7 (389-681)||(2929884-2930188)
chr7 (12-95)||(6187516-6187599)
chr7 (12-95)||(6194032-6194115)
chr7 (537-591)||(18289908-18289962)
chr7 (148-191)||(17298587-17298630)
[»] chr2 (2 HSPs)
chr2 (388-670)||(36727004-36727292)
chr2 (401-446)||(2592172-2592217)
[»] chr8 (4 HSPs)
chr8 (141-191)||(24948591-24948641)
chr8 (134-192)||(45163934-45163992)
chr8 (537-591)||(8358195-8358249)
chr8 (510-586)||(14376756-14376832)
[»] chr6 (3 HSPs)
chr6 (537-591)||(15879461-15879515)
chr6 (510-588)||(18089413-18089491)
chr6 (148-184)||(2281968-2282004)
[»] chr5 (3 HSPs)
chr5 (152-192)||(38256928-38256968)
chr5 (129-192)||(1054258-1054321)
chr5 (134-191)||(14536126-14536183)
[»] chr4 (4 HSPs)
chr4 (141-192)||(40835528-40835579)
chr4 (537-591)||(13918862-13918916)
chr4 (537-588)||(6560454-6560505)
chr4 (148-184)||(19277971-19278007)
[»] chr3 (5 HSPs)
chr3 (510-588)||(38352921-38352999)
chr3 (518-587)||(10974363-10974432)
chr3 (536-587)||(32264597-32264648)
chr3 (510-588)||(38353073-38353151)
chr3 (523-591)||(37835615-37835683)
[»] scaffold0284 (1 HSPs)
scaffold0284 (537-588)||(6986-7037)
[»] scaffold0216 (1 HSPs)
scaffold0216 (537-588)||(29730-29781)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 4e-74; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 6203912 - 6204093
Alignment:
Q  11 cagagattagacataaatggccaaacactattattaattatgtgtgttagcctttatttcactttcactagtctcattagagaaattttgcatagtttcc 110  Q
    |||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  6203912 cagagattaggcataaatggccaaacgctattatcaattaggtgtgttagcctttatttcactttcaccggtcttattagagaaattttgcatagtttcc 6204011  T
Q  111 taacactaatatggttggagaggaagtctgagatgaacacaaccccaaatcaaaatgattgaggcacactcacaaaacatag 192  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  6204012 taacactaatatggttggagaggaagtctgagatgaatacaaccccaaatcaaaatgatttagacacactcacaaaacatag 6204093  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 389 - 681
Target Start/End: Original strand, 2929884 - 2930188
Alignment:
Q  389 aacttcttcaccacacacataaaattaccaccatatcacttcattccttataacctcatcgccaaacatacaatttt-------tcttttactggtatca 481  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||| |||||||| || ||||||||||||| |       | |||||| ||| |||    
T  2929884 aacttcttcaccacacccataaaattaccaccatatcactctattccttgtaacctcaacgacaaacatacaattatgtatatattttttaccggtctca 2929983  T
Q  482 tttatctcattaccaannnnnnnn--catgttctttccttttcaatttcccttatctcttctcatga---aagatagaaacataaacatccctccattaa 576  Q
    ||||||||| || |||          |||||||||||||||||||| ||| |||||||||||||| |   |||  || ||||||||||||||||||||||    
T  2929984 tttatctcaatatcaaatttatttttcatgttctttccttttcaatctcctttatctcttctcataataaaagtaaggaacataaacatccctccattaa 2930083  T
Q  577 attaccaccaactcannnnnnngaccatactgtgccttcatttgaccatatatgactatgtcacacaattacaaatgtggagacttgcatacttgacata 676  Q
    ||||| |||||||||       ||||||  |||| ||||||||| || ||| ||||||||||||| ||||||  ||||||||||||||| |||||||| |    
T  2930084 attacaaccaactcatctttctgaccatgttgtgtcttcatttggccttatctgactatgtcacataattacggatgtggagacttgcacacttgacaga 2930183  T
Q  677 aagat 681  Q
    |||||    
T  2930184 aagat 2930188  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 6187516 - 6187599
Alignment:
Q  12 agagattagacataaatggccaaacactattattaattatgtgtgttagcctttatttcactttcactagtctcattagagaaa 95  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6187516 agagattagacataaatggccaaacgctattatcaattatgtgtgttagcctttatttcactttcactagtctcattagagaaa 6187599  T

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Target: chr7; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 6194032 - 6194115
Alignment:
Q  12 agagattagacataaatggccaaacactattattaattatgtgtgttagcctttatttcactttcactagtctcattagagaaa 95  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6194032 agagattagacataaatggccaaacgctattatcaattatgtgtgttagcctttatttcactttcactagtctcattagagaaa 6194115  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 591
Target Start/End: Complemental strand, 18289962 - 18289908
Alignment:
Q  537 cttctcatgaaagatagaaacataaacatccctccattaaattaccaccaactca 591  Q
    |||||||||||||| || ||||||||| || ||||||||||| ||||||||||||    
T  18289962 cttctcatgaaagaaaggaacataaacctcactccattaaataaccaccaactca 18289908  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 17298587 - 17298630
Alignment:
Q  148 cacaaccccaaatcaaaatgattgaggcacactcacaaaacata 191  Q
    ||||||||||||||||||| |||  |||||||||||||||||||    
T  17298587 cacaaccccaaatcaaaataatttgggcacactcacaaaacata 17298630  T

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Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 388 - 670
Target Start/End: Complemental strand, 36727292 - 36727004
Alignment:
Q  388 caacttcttcaccacacacataaaattaccaccatatcacttcattccttataacctcatcgccaaacatacaat--ttttctttt--actggtatcatt 483  Q
    ||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||| | ||||||||||||  |||| ||||   ||  |||||||    
T  36727292 caacttcttcaccacacccataaaattaccaccaaatcactccattacttataacctcattgacaaacatacaattcttttgtttttccctcatatcatt 36727193  T
Q  484 tatctcattaccaa--nnnnnnnncatgttctttccttttcaatttcccttatctcttctcatgaaagatagaaacataaacatccctccattaaattac 581  Q
    ||||||| || |||          ||| |||||||||||||||||||  |||||||||||||||||||| |  ||||||||  || ||||||||||||||    
T  36727192 tatctcaatatcaaatttatttttcatcttctttccttttcaatttcttttatctcttctcatgaaagaaatgaacataaaactcgctccattaaattac 36727093  T
Q  582 caccaactcannnnnnngaccatactgtgccttcatttgaccatatatgactatgtcacacaattacaaatgtggagacttgcatactt 670  Q
    ||||||||||       ||| ||  || | | |||||||||| ||| |||| |||||||| |||||||||| |||||||| ||| ||||    
T  36727092 caccaactcatctttttgacaatgttgcgacctcatttgaccttatttgaccatgtcacataattacaaatttggagactcgcacactt 36727004  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 2592217 - 2592172
Alignment:
Q  401 acacacataaaattaccaccatatcacttcattccttataacctca 446  Q
    |||||||||||||||||| || |||||| |||||||||||||||||    
T  2592217 acacacataaaattaccagcaaatcactccattccttataacctca 2592172  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 24948641 - 24948591
Alignment:
Q  141 agatgaacacaaccccaaatcaaaatgattgaggcacactcacaaaacata 191  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  24948641 agatgaacacaaccccaaatcaaaatgatttggacacactcacaaaacata 24948591  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 45163934 - 45163992
Alignment:
Q  134 aagtctgagatgaacacaaccccaaatcaaaatgattgaggcacactcacaaaacatag 192  Q
    |||||| |||||| |||||||||| ||||||||||||  ||||||||||||||||||||    
T  45163934 aagtcttagatgagcacaaccccagatcaaaatgatttgggcacactcacaaaacatag 45163992  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 591
Target Start/End: Complemental strand, 8358249 - 8358195
Alignment:
Q  537 cttctcatgaaagatagaaacataaacatccctccattaaattaccaccaactca 591  Q
    |||||||||||||| || ||||||||| ||| ||| |||||| ||||||||||||    
T  8358249 cttctcatgaaagaaaggaacataaacctccatccgttaaatcaccaccaactca 8358195  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 510 - 586
Target Start/End: Original strand, 14376756 - 14376832
Alignment:
Q  510 ttctttccttttcaatttcccttatctcttctcatgaaagatagaaacataaacatccctccattaaattaccacca 586  Q
    ||||||| |||||||||| | || |||||| | |||||||| ||||||||  |  |||||| |||||||||||||||    
T  14376756 ttctttctttttcaatttactttctctcttttaatgaaagaaagaaacatgtatctccctctattaaattaccacca 14376832  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 591
Target Start/End: Original strand, 15879461 - 15879515
Alignment:
Q  537 cttctcatgaaagatagaaacataaacatccctccattaaattaccaccaactca 591  Q
    |||||||||||||| || ||||||||| |||||||||||||| ||||||||||||    
T  15879461 cttctcatgaaagaaaggaacataaacctccctccattaaatcaccaccaactca 15879515  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 588
Target Start/End: Complemental strand, 18089491 - 18089413
Alignment:
Q  510 ttctttccttttcaatttcccttatctcttctcatgaaagatagaaacataaacatccctccattaaattaccaccaac 588  Q
    ||||||||||||| | ||  ||| || |||||||| ||||| ||||| |||||| |||||||||||||||| |||||||    
T  18089491 ttctttccttttctaatttacttctcacttctcatcaaagaaagaaatataaacctccctccattaaattatcaccaac 18089413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 2282004 - 2281968
Alignment:
Q  148 cacaaccccaaatcaaaatgattgaggcacactcaca 184  Q
    |||||||||||||||||| |||| |||||||||||||    
T  2282004 cacaaccccaaatcaaaaagatttaggcacactcaca 2281968  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 38256928 - 38256968
Alignment:
Q  152 accccaaatcaaaatgattgaggcacactcacaaaacatag 192  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  38256928 accccaaatcaaaatgatttaggcacactcacaaaacatag 38256968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 1054321 - 1054258
Alignment:
Q  129 agaggaagtctgagatgaacacaaccccaaatcaaaatgattgaggcacactcacaaaacatag 192  Q
    |||| |||||| |||||  |||||||| ||||||||||||||  ||||||||||||| ||||||    
T  1054321 agagaaagtctaagatgggcacaaccctaaatcaaaatgatttgggcacactcacaagacatag 1054258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 14536126 - 14536183
Alignment:
Q  134 aagtctgagatgaacacaaccccaaatcaaaatgattgaggcacactcacaaaacata 191  Q
    |||||| |||||  ||||||||| |||||||||||||   ||||||||||||||||||    
T  14536126 aagtcttagatgggcacaaccccgaatcaaaatgatttgagcacactcacaaaacata 14536183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 40835579 - 40835528
Alignment:
Q  141 agatgaacacaaccccaaatcaaaatgattgaggcacactcacaaaacatag 192  Q
    |||||| |||||||||||||||||||||||  | ||||||||||||||||||    
T  40835579 agatgagcacaaccccaaatcaaaatgatttggacacactcacaaaacatag 40835528  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 537 - 591
Target Start/End: Original strand, 13918862 - 13918916
Alignment:
Q  537 cttctcatgaaagatagaaacataaacatccctccattaaattaccaccaactca 591  Q
    |||||||||||||| || ||||||||  |||||||||||||| ||||||||||||    
T  13918862 cttctcatgaaagaaaggaacataaatctccctccattaaatcaccaccaactca 13918916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 588
Target Start/End: Original strand, 6560454 - 6560505
Alignment:
Q  537 cttctcatgaaagatagaaacataaacatccctccattaaattaccaccaac 588  Q
    |||||||||||||| || ||||||||| | |||||||||||| |||||||||    
T  6560454 cttctcatgaaagaaaggaacataaacctacctccattaaatcaccaccaac 6560505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 19278007 - 19277971
Alignment:
Q  148 cacaaccccaaatcaaaatgattgaggcacactcaca 184  Q
    |||||||||||||||||| |||| |||||||||||||    
T  19278007 cacaaccccaaatcaaaaagatttaggcacactcaca 19277971  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 588
Target Start/End: Complemental strand, 38352999 - 38352921
Alignment:
Q  510 ttctttccttttcaatttcccttatctcttctcatgaaagatagaaacataaacatccctccattaaattaccaccaac 588  Q
    ||||||||||||| | ||  ||| || |||||||| ||||| ||||| |||||| |||||||||||||||| |||||||    
T  38352999 ttctttccttttctaatttacttctcacttctcatcaaagaaagaaatataaacttccctccattaaattatcaccaac 38352921  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 587
Target Start/End: Complemental strand, 10974432 - 10974363
Alignment:
Q  518 ttttcaatttcccttatctcttctcatgaaagatagaaacataaacatccctccattaaattaccaccaa 587  Q
    |||| ||||||| |||||| ||||||||||| | || |||| |||||||||| |||||| ||||||||||    
T  10974432 ttttaaatttcctttatcttttctcatgaaataaagtaacaaaaacatcccttcattaagttaccaccaa 10974363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 587
Target Start/End: Complemental strand, 32264648 - 32264597
Alignment:
Q  536 tcttctcatgaaagatagaaacataaacatccctccattaaattaccaccaa 587  Q
    ||||||||||||||| |||||||||||| ||||||||| |||  ||||||||    
T  32264648 tcttctcatgaaagaaagaaacataaacttccctccatgaaaccaccaccaa 32264597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 588
Target Start/End: Complemental strand, 38353151 - 38353073
Alignment:
Q  510 ttctttccttttcaatttcccttatctcttctcatgaaagatagaaacataaacatccctccattaaattaccaccaac 588  Q
    ||||||||||||| | ||  ||| || |||||||| ||||| ||||| |||||| | |||||||||||||| |||||||    
T  38353151 ttctttccttttctaatttacttctcacttctcatcaaagaaagaaatataaactttcctccattaaattatcaccaac 38353073  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 37835683 - 37835615
Alignment:
Q  523 aatttcccttatctcttctcatgaaagatagaaacataaacatccctccattaaattaccaccaactca 591  Q
    ||||||| || ||||||||||||||||| |  ||||||||   ||||| ||||||||| ||||||||||    
T  37835683 aatttcctttctctcttctcatgaaagaaaacaacataaatccccctctattaaattatcaccaactca 37835615  T

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Target: scaffold0284 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 588
Target Start/End: Complemental strand, 7037 - 6986
Alignment:
Q  537 cttctcatgaaagatagaaacataaacatccctccattaaattaccaccaac 588  Q
    |||||||||||||| || ||||||||| | |||||||||||| |||||||||    
T  7037 cttctcatgaaagaaaggaacataaacctacctccattaaatcaccaccaac 6986  T

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Target: scaffold0216 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 588
Target Start/End: Complemental strand, 29781 - 29730
Alignment:
Q  537 cttctcatgaaagatagaaacataaacatccctccattaaattaccaccaac 588  Q
    |||||||||||||| || ||||||||| | |||||||||||| |||||||||    
T  29781 cttctcatgaaagaaaggaacataaacctacctccattaaatcaccaccaac 29730  T

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