View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_10 (Length: 406)
Name: NF20628_low_10
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 14011907 - 14012281
Alignment:
| Q |
17 |
cacagccttgatgagcacaacgtattgggaaactgccttggttttttatagcagattcacactgctccaccatacatgacccgcagaacaaatgaccaca |
116 |
Q |
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| T |
14011907 |
cacagccctgatgagcacaacgtattgggaaactgccttggttttttatagcagattcacactgctccaccatacatgaccggcagaacaaatgaccaca |
14012006 |
T |
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| Q |
117 |
accttcaagctgatatccatcctcaacctcacacaagcaaattgcgcaactaggtccagtgtcaaatctctcgcttgaaggattgcttaaacgtgcaatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14012007 |
accttcaagctgatatccatcctcaacctcacacaagcaaattgggcaactaggtccagtgtcaaatctctcgcttgaaggattgcttaaacgtgcaatc |
14012106 |
T |
|
| Q |
217 |
tcaaaagttatttcctccactcttgatttcaactccgagttaccatgaaaaaggattgtcctgttgcgtgtgttaagcctaagatctgccccgggtacct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14012107 |
tcaaaagttatttcctccactcttgatttcaactccgagttaccatgacaaaggattgtccggttgcgtgtgttaagcctaagatctgccccgggtacct |
14012206 |
T |
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| Q |
317 |
tctcttttagtccatgaagatctggcccgaaattcttaaccacttgcttcataaaatcagaaggtaggtcccttc |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14012207 |
tctcttttagtccatgaagatctggcccgaaattcttaaccacttgcttcataaaatcagaaggtaggtcccttc |
14012281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 3882020 - 3881646
Alignment:
| Q |
17 |
cacagccttgatgagcacaacgtattgggaaactgccttggttttttatagcagattcacactgctccaccatacatgacccgcagaacaaatgaccaca |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3882020 |
cacagccctgatgagcacaacgtattgggaaactgccttggttttttatagcagattcacactgctccaccatacatgactggcagaacaaatgaccaca |
3881921 |
T |
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| Q |
117 |
accttcaagctgatatccatcctcaacctcacacaagcaaattgcgcaactaggtccagtgtcaaatctctcgcttgaaggattgcttaaacgtgcaatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3881920 |
accttcaagctgatatccatcctcaacctcacacaagcaaattgggcaactaggtccagtgtcaaatctctcgcttgaaggattgcttaaacgtgcaatc |
3881821 |
T |
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| Q |
217 |
tcaaaagttatttcctccactcttgatttcaactccgagttaccatgaaaaaggattgtcctgttgcgtgtgttaagcctaagatctgccccgggtacct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3881820 |
tcaaaagttatttcctccactcttgatttcaactccgagttaccatgacaaaggattgtccggttgcgtgtgttaagcctaagatctgccccgggtacct |
3881721 |
T |
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| Q |
317 |
tctcttttagtccatgaagatctggcccgaaattcttaaccacttgcttcataaaatcagaaggtaggtcccttc |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3881720 |
tctcttttagtccatgaagatctggcccgaaattcttaaccacttgcttcataaaatcagaaggtaggtcccttc |
3881646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 39317372 - 39317742
Alignment:
| Q |
17 |
cacagccttgatgagcacaacgtattgggaaactgccttggttttttatagcagattcacactgctccaccatacatgacccgcagaacaaatgaccaca |
116 |
Q |
| |
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|||||||||| |||||||| | ||||||||||||||||||||| || |||||||||||||| |||||||||| ||| || |||||||||||||||||| |
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| T |
39317372 |
cacagccttggtgagcacagcatattgggaaactgccttggttcttaatagcagattcacattgctccaccagacacagccggcagaacaaatgaccaca |
39317471 |
T |
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| Q |
117 |
accttcaagctgatatccatcctcaacctcacacaagcaaattgcgcaactaggtccagtgtcaaatctctcgcttgaaggattgcttaaacgtgcaatc |
216 |
Q |
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|||||||| | ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| | || ||| |||| |||| ||||| |
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| T |
39317472 |
gccttcaagtttatatccatcctcaacctcacacaggcaaattgggcaactaggtccagtgtcaagtctctcaactaaatgatggcttgaacgcgcaatt |
39317571 |
T |
|
| Q |
217 |
tcaaaagttatttcctccactcttgatttcaactccgagttaccatgaaaaaggattgtcctgtt-gcgtgtgttaagcctaagatctgccccgggtacc |
315 |
Q |
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|| | |||||||||||||||||||| |||||||||| ||| ||||||| || |||| | |||| ||| |||||||| ||||| ||||| |||||| |
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| T |
39317572 |
tccagagttatttcctccactcttggtttcaactccttgttgccatgaagaaagattat-ttgttggcgggtgttaagttcgagatcagccccaggtacc |
39317670 |
T |
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| Q |
316 |
ttctcttttagtccatgaagatctggcccgaaattcttaaccacttgcttcataaaatcagaaggtaggtcc |
387 |
Q |
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||||||||||| || |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |
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| T |
39317671 |
ttctcttttagcccgtgaagatctggcccaaaattcttaaccacttgcttcattaagtcagaaggtaggtcc |
39317742 |
T |
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