View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_11 (Length: 397)
Name: NF20628_low_11
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 375
Target Start/End: Complemental strand, 40665672 - 40665310
Alignment:
| Q |
15 |
acatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacaggttccccctcacagaagacctcagtgtctggagcaaccacacagaact |
114 |
Q |
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| T |
40665672 |
acatcatcataaccaacttcatcaagtctttcttcatcatctcttttcacaggttccccctcacagaagatctcagtgtctggagcaaccgtacagtact |
40665573 |
T |
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| Q |
115 |
ccccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa |
214 |
Q |
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| T |
40665572 |
caccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa |
40665473 |
T |
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| Q |
215 |
atacgctgtaaattacatacattaaaaaagttaagacttgtgc--aaagattaacatatacatataacatattcaaaatgtaaaattataatgcctctaa |
312 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665472 |
ataggctgtaaattatatacattaaaaaagttaagacttgtgcaaaaagattaacatatacatataacatattcaaaatgtaaaattataatgcctctaa |
40665373 |
T |
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| Q |
313 |
gacactaaagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcac |
375 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665372 |
gaaactaaagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaactcac |
40665310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 40724382 - 40724641
Alignment:
| Q |
15 |
acatcatcataaccaacttcatcaagtctttcttcatcctctcttttcacaggttccccctcacagaagacctcagtgtctggagcaaccacacagaact |
114 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
40724382 |
acatcatcataaccgacttcatcaagcctttcttcatcctctcttttcacgggttccccctcgcagaagacctcagtgtctggagcaaccgcacagaact |
40724481 |
T |
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| Q |
115 |
ccccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaatagatctccttttctgacgggacgataagcttccacgaa |
214 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| ||| |
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| T |
40724482 |
ccccaggatcagtttcattgaccttaaattctacacttctcatccctccccgcacaagaaatagatctccttttctgaccggacaataagcctccaagaa |
40724581 |
T |
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| Q |
215 |
atacgctgtaaattacatacattaaaaaagttaagacttgtgcaaagattaacatatacat |
275 |
Q |
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||| ||||||||||| |||||| ||||||||| ||||||||||| ||| || |||||||| |
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| T |
40724582 |
ataggctgtaaattagatacatcaaaaaagtt-agacttgtgcagagacaaaaatatacat |
40724641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 40725193 - 40725234
Alignment:
| Q |
334 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcac |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
40725193 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcac |
40725234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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