View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_12 (Length: 390)
Name: NF20628_low_12
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_12 |
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| [»] scaffold0039 (3 HSPs) |
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Alignment Details
Target: scaffold0039 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 62360 - 61974
Alignment:
| Q |
1 |
ttactaacagcaactgatagaca------ctgatagctcatcagctatacgctcccctcactgttatgagttcctaaaactcagagaatcagctccctta |
94 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
62360 |
ttactaacagcaactgatagacatccttactgatagcacatcagctatacgctcccctcactgttatgagttcctaaaactcagagaatcagctccctta |
62261 |
T |
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| Q |
95 |
agagttggagcttcagttgtaatttgtaactatttatagccatctctttggcaacaataatcaagcaattatcattccgttatggtattcagagctaatt |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
62260 |
agagttggagcttcagttgtaatttgtaactatttatagccatctctttggcaacaataatcaagtaattatcattcctttatggtattcagagctaatt |
62161 |
T |
|
| Q |
195 |
agcttaaaagca--nnnnnnnnncacgatccctaaaccatgtcttcatcaaactctgaaattgaaaattcccaactaacacccactgtgtcatcaccagc |
292 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
62160 |
agcttaaaagcaattttttttttcacgatccctaaaccatgtcttcatcaaactctgaaattgaaaattcccaactgacacccactgtgtcatcaccagt |
62061 |
T |
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| Q |
293 |
tgacaaattaatcatcttgaatgctggttcccaactctccataaaacttgatggagacaattatcctgcttggagaattcagttcat |
379 |
Q |
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| T |
62060 |
tgacaaattaatcatcttgaatgctggttcccaactctccataaaacttgatggagacaattatcctgcttggagaattcagttcat |
61974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 56865 - 56783
Alignment:
| Q |
90 |
ccttaagagttggagcttcagttgtaatttgtaactatttatagccatctctttggcaacaataatcaagcaattatcattcc |
172 |
Q |
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| T |
56865 |
ccttaagagttggagcttcagttgtaatttgtaactatttatagccatctctttggcaacaataatcaagtaattatcattcc |
56783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 57924 - 57825
Alignment:
| Q |
1 |
ttactaacagcaactgatagaca------ctgatagctcatcagctatacgctcccctcactgttatgagttcctaaaactcagagaatcagctccctta |
94 |
Q |
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| T |
57924 |
ttactaacagcaactgatagacatccttactgatagcacatcagctatacgctcccctcactgttatgagtttctaaaactcagagaatcagctccctta |
57825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 19417131 - 19417518
Alignment:
| Q |
1 |
ttactaacagcaactgatagaca------ctgatagctcatcagctatacgctcccctcactgttatgagttcctaaaactcagagaatcagctccctta |
94 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19417131 |
ttactaacagcaactgatagacatccttactgatagtacatcagctatacgctcccctcacttttatgagttcctaaaactcagagaatcagctccctta |
19417230 |
T |
|
| Q |
95 |
agagttggagcttcagttgtaatttgtaactatttatagccatctctttggcaacaataatcaagcaattatcattccgttatggtattcagagctaatt |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||||||| |
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| T |
19417231 |
agagttggagcttcagttgtaatttgtaactatttatagccatctctttggcaacaataataaagcaactatcattcctttatgatattcagagctaatt |
19417330 |
T |
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| Q |
195 |
agcttaaaagca---nnnnnnnnncacgatccctaaaccatgtcttcatcaaactctgaaattgaaaattcccaactaacacccactgtgtcatcaccag |
291 |
Q |
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|||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19417331 |
agcttacaagcaatttttttttttcacgatccctaaactatgtcttcatcaaactctaaaattgaaaattcccaactgacacccactgtgtcatcaccag |
19417430 |
T |
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| Q |
292 |
ctgacaaattaatcatcttgaatgctggttcccaactctccataaaacttgatggagacaattatcctgcttggagaattcagttcat |
379 |
Q |
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| T |
19417431 |
ttgacaaattattcatcttgaatgctggttcccaactctccataaaacttgatggagacaattatcctgcttggagaattcagttcat |
19417518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 23974014 - 23973935
Alignment:
| Q |
294 |
gacaaattaatcatcttgaatgctggttcccaactctccataaaacttgatggagacaattatcctgcttggagaattca |
373 |
Q |
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||||||||||| || | ||||| || || ||| | ||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
23974014 |
gacaaattaattgtccttaatgcaggatctcaattatccatcaaacttgatggagacaattatccagcttggagaattca |
23973935 |
T |
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