View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_13 (Length: 385)
Name: NF20628_low_13
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 3069258 - 3069609
Alignment:
| Q |
16 |
atagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacatgcaacatgatttaaattagt |
115 |
Q |
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| T |
3069258 |
atagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacattcaacatgatttaaattagt |
3069357 |
T |
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| Q |
116 |
accatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatttgattcatatggactaaaatt |
215 |
Q |
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| T |
3069358 |
accatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatttgattcatatggactaaaatt |
3069457 |
T |
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| Q |
216 |
agcatttggatttacttgcacagttgatgtaaaagattcaattttcattttgaaattggccatctaatctttnnnnnnnnnnnnnnnnnncaactatgta |
315 |
Q |
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| T |
3069458 |
agcatttggatttacttgcacagatgatgtaaaagattcaattttcattttgaaattggccatctaatctttagagagagagagagagagcaactatgta |
3069557 |
T |
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| Q |
316 |
gatatagatattagatatagaaactacagtcgcacccatatacacgggtaca |
367 |
Q |
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| T |
3069558 |
gatatagatattagatatagaaactacagtcgcacccatatacacgggtaca |
3069609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 3067059 - 3067308
Alignment:
| Q |
20 |
cagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacatgcaacatgatttaaattagtacca |
119 |
Q |
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| T |
3067059 |
cagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgttgtcaac-------atgatttaaattagtacca |
3067151 |
T |
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| Q |
120 |
tttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatttgattcatatggactaaaattagca |
219 |
Q |
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| T |
3067152 |
tttggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagcaaatatacaatgataaaatttgatccatatgcactaaaattagca |
3067251 |
T |
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| Q |
220 |
tttggatttacttgcacagt-tgatgtaaaagattcaattttcattttgaaattggc |
275 |
Q |
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| T |
3067252 |
tttggatttacttgcacagtatgatgtaaaagattcaattttcattttgaagttggc |
3067308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 287
Target Start/End: Original strand, 3047733 - 3047927
Alignment:
| Q |
97 |
caacatgatttaaattagta--ccatttggggtaagtgaagcacaacttgatcac--tcaatgtaattgaagaaagtgaagcagatgcacaataataaaa |
192 |
Q |
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| T |
3047733 |
caacatgatttaaattagtataccatttgga-taactgaagaaaaacttgaccacactcaatgtgattgaagaaagtgaatcgcgggcacgataataaca |
3047831 |
T |
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| Q |
193 |
tttgattcatatggactaaaattagcatttggatttacttgcacagt-tgatgtaaaagattcaattttcattttgaaattggccatctaatcttt |
287 |
Q |
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| T |
3047832 |
tttgcatcctaagtactaaaatttccaattggatttacatgtacaatatgatgtaaaagtttcagttttcattttgaaattgacaatgtaatcttt |
3047927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 32304853 - 32304911
Alignment:
| Q |
116 |
accatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagc |
174 |
Q |
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| T |
32304853 |
accatttgtggtaagtgaagcacaacttgaccactcaagatgattgaagaaattgaagc |
32304911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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