View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20628_low_15 (Length: 378)

Name: NF20628_low_15
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20628_low_15
NF20628_low_15
[»] chr1 (8 HSPs)
chr1 (18-201)||(5934013-5934197)
chr1 (284-352)||(5933026-5933094)
chr1 (141-201)||(5933934-5933995)
chr1 (284-352)||(19253644-19253712)
chr1 (214-248)||(5933880-5933914)
chr1 (248-278)||(29836237-29836267)
chr1 (250-278)||(39076266-39076294)
chr1 (250-278)||(40981638-40981666)
[»] chr7 (3 HSPs)
chr7 (284-352)||(18196927-18196995)
chr7 (250-278)||(13761781-13761809)
chr7 (250-278)||(24759474-24759502)
[»] chr3 (2 HSPs)
chr3 (246-278)||(52126881-52126913)
chr3 (249-278)||(29129129-29129158)
[»] chr5 (4 HSPs)
chr5 (222-252)||(26044885-26044915)
chr5 (248-278)||(40946708-40946738)
chr5 (249-278)||(30463749-30463778)
chr5 (250-278)||(4077838-4077866)
[»] scaffold0005 (1 HSPs)
scaffold0005 (249-278)||(230463-230492)
[»] chr4 (14 HSPs)
chr4 (245-278)||(1678493-1678526)
chr4 (249-278)||(14210463-14210492)
chr4 (249-278)||(14211432-14211461)
chr4 (249-278)||(14212383-14212412)
chr4 (249-278)||(14213352-14213381)
chr4 (249-278)||(14214320-14214349)
chr4 (249-278)||(14215289-14215318)
chr4 (249-278)||(14218160-14218189)
chr4 (249-278)||(14219130-14219159)
chr4 (249-278)||(14220099-14220128)
chr4 (249-278)||(14221050-14221079)
chr4 (249-278)||(14222019-14222048)
chr4 (249-278)||(14222988-14223017)
chr4 (249-278)||(14586882-14586911)
[»] chr8 (1 HSPs)
chr8 (250-278)||(38681137-38681165)
[»] chr2 (1 HSPs)
chr2 (250-278)||(26449093-26449121)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 5934197 - 5934013
Alignment:
Q  18 ttttggaaatgccaaatttatatactaacaaaaaggagttaagattatgttctccatatcttcttcctttacttgctgttttggtgaagttatatttatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5934197 ttttggaaatgccaaatttatatactaacaaaaaggagttaagattatgttctccatatcttcttcctttacttgctgttttggtgatgttatatttatt 5934098  T
Q  118 tatttcagccgaaagaacacttatttaatgtaatgtaacgtgga-cctatgtacaaaaacttgtgtggggtcctgccttcactac 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||  |||||||||| ||||||||||||||||||||||    
T  5934097 tatttcagccgaaagaacacttatttaatgtaatgcaacgtggaccctatacacaaaaacttatgtggggtcctgccttcactac 5934013  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 5933094 - 5933026
Alignment:
Q  284 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttca 352  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  5933094 tggttgatgaaaatggcaacgtatggaactgcagtctccagttttcggagactccttatgcagacttca 5933026  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 5933995 - 5933934
Alignment:
Q  141 tttaatgtaatgtaacgtggacc-tatgtacaaaaacttgtgtggggtcctgccttcactac 201  Q
    |||||||||||| |||||||||| |||  |||||||||| ||||||||||||||||||||||    
T  5933995 tttaatgtaatgcaacgtggaccctatacacaaaaacttatgtggggtcctgccttcactac 5933934  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 19253712 - 19253644
Alignment:
Q  284 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttca 352  Q
    |||| ||||| |||||||| || ||||||| ||| || | || ||||||||||||||||||||||||||    
T  19253712 tggtggatgagaatggcaatgtctggaactgcagccttctgtattcggagactccttatgcaaacttca 19253644  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 5933914 - 5933880
Alignment:
Q  214 cctttctaatcatatcatacttcatacttatttct 248  Q
    |||||||||||||||||||||||||| ||||||||    
T  5933914 cctttctaatcatatcatacttcatatttatttct 5933880  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Original strand, 29836237 - 29836267
Alignment:
Q  248 taatcctttatatctaatcctagcaaacatg 278  Q
    |||||||||||||||||||||||||||||||    
T  29836237 taatcctttatatctaatcctagcaaacatg 29836267  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 39076294 - 39076266
Alignment:
Q  250 atcctttatatctaatcctagcaaacatg 278  Q
    |||||||||||||||||||||||||||||    
T  39076294 atcctttatatctaatcctagcaaacatg 39076266  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 40981666 - 40981638
Alignment:
Q  250 atcctttatatctaatcctagcaaacatg 278  Q
    |||||||||||||||||||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatg 40981638  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 18196927 - 18196995
Alignment:
Q  284 tggttgatgaaaatggcaacgtatggaactacagtctccagttttcggagactccttatgcaaacttca 352  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18196927 tggttgatgaaaatggcaacgtatggaactgcagtctccagttttcggagactccttatgcaaacttca 18196995  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 13761781 - 13761809
Alignment:
Q  250 atcctttatatctaatcctagcaaacatg 278  Q
    |||||||||||||||||||||||||||||    
T  13761781 atcctttatatctaatcctagcaaacatg 13761809  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 24759474 - 24759502
Alignment:
Q  250 atcctttatatctaatcctagcaaacatg 278  Q
    |||||||||||||||||||||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatg 24759502  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 52126881 - 52126913
Alignment:
Q  246 tctaatcctttatatctaatcctagcaaacatg 278  Q
    |||||||||||||||||||||||||||||||||    
T  52126881 tctaatcctttatatctaatcctagcaaacatg 52126913  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Original strand, 29129129 - 29129158
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  29129129 aatcctttatatctaatcctagcaaacatg 29129158  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 26044915 - 26044885
Alignment:
Q  222 atcatatcatacttcatacttatttctaatc 252  Q
    |||||||||||||||||||||||||||||||    
T  26044915 atcatatcatacttcatacttatttctaatc 26044885  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Original strand, 40946708 - 40946738
Alignment:
Q  248 taatcctttatatctaatcctagcaaacatg 278  Q
    |||||||||||||||||||||||||||||||    
T  40946708 taatcctttatatctaatcctagcaaacatg 40946738  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Original strand, 30463749 - 30463778
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  30463749 aatcctttatatctaatcctagcaaacatg 30463778  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 4077838 - 4077866
Alignment:
Q  250 atcctttatatctaatcctagcaaacatg 278  Q
    |||||||||||||||||||||||||||||    
T  4077838 atcctttatatctaatcctagcaaacatg 4077866  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Original strand, 230463 - 230492
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  230463 aatcctttatatctaatcctagcaaacatg 230492  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 1678526 - 1678493
Alignment:
Q  245 ttctaatcctttatatctaatcctagcaaacatg 278  Q
    |||| |||||||||||||||||||||||||||||    
T  1678526 ttctgatcctttatatctaatcctagcaaacatg 1678493  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14210492 - 14210463
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14210492 aatcctttatatctaatcctagcaaacatg 14210463  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14211461 - 14211432
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14211461 aatcctttatatctaatcctagcaaacatg 14211432  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14212412 - 14212383
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14212412 aatcctttatatctaatcctagcaaacatg 14212383  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14213381 - 14213352
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14213381 aatcctttatatctaatcctagcaaacatg 14213352  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14214349 - 14214320
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14214349 aatcctttatatctaatcctagcaaacatg 14214320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14215318 - 14215289
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14215318 aatcctttatatctaatcctagcaaacatg 14215289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14218189 - 14218160
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14218189 aatcctttatatctaatcctagcaaacatg 14218160  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14219159 - 14219130
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14219159 aatcctttatatctaatcctagcaaacatg 14219130  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14220128 - 14220099
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14220128 aatcctttatatctaatcctagcaaacatg 14220099  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14221079 - 14221050
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14221079 aatcctttatatctaatcctagcaaacatg 14221050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14222048 - 14222019
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14222048 aatcctttatatctaatcctagcaaacatg 14222019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14223017 - 14222988
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14223017 aatcctttatatctaatcctagcaaacatg 14222988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 14586911 - 14586882
Alignment:
Q  249 aatcctttatatctaatcctagcaaacatg 278  Q
    ||||||||||||||||||||||||||||||    
T  14586911 aatcctttatatctaatcctagcaaacatg 14586882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 38681137 - 38681165
Alignment:
Q  250 atcctttatatctaatcctagcaaacatg 278  Q
    |||||||||||||||||||||||||||||    
T  38681137 atcctttatatctaatcctagcaaacatg 38681165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 26449093 - 26449121
Alignment:
Q  250 atcctttatatctaatcctagcaaacatg 278  Q
    |||||||||||||||||||||||||||||    
T  26449093 atcctttatatctaatcctagcaaacatg 26449121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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