View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20628_low_17 (Length: 362)

Name: NF20628_low_17
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20628_low_17
NF20628_low_17
[»] chr2 (8 HSPs)
chr2 (1-353)||(29541246-29541599)
chr2 (186-297)||(29518136-29518247)
chr2 (184-290)||(29507196-29507302)
chr2 (184-297)||(29535270-29535383)
chr2 (186-290)||(29511018-29511122)
chr2 (199-353)||(29505391-29505545)
chr2 (189-290)||(29549036-29549137)
chr2 (189-353)||(29490454-29490618)
[»] chr4 (1 HSPs)
chr4 (190-299)||(51266291-51266400)
[»] scaffold0186 (1 HSPs)
scaffold0186 (266-299)||(9156-9189)
[»] chr8 (1 HSPs)
chr8 (266-299)||(18874653-18874686)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 29541246 - 29541599
Alignment:
Q  1 cgagtcagttcacaagtcctaactcgactgataaaaatatcaaaactggtaaatcagacgccatgatcaacgttcgaaccccatccctccactggtgtgt 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||| |||  ||||||||| ||||||    
T  29541246 cgagtcagttcacaagtcctaactcaactgataaaaatatcaaaactggtaaatcgaacgccatgatcaacgttcgaatcccgaccctccacttgtgtgt 29541345  T
Q  101 gtgggttccaatattatttgtcttttcgtctatctacataaagaaaatatacgagtcnnnnnnn-taaaatttgaagactcttattatataccttcttat 199  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  29541346 gtgggttccaatattgtttgtcttttcgtctatctacagaaagaaaatatacgagtaaaataaaataaaatttgaagactcttattatataccttcttat 29541445  T
Q  200 caacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaatatactcaacaat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29541446 caacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaatatactcaacaat 29541545  T
Q  300 tacaagtgactcacaaataggtttgccattgtggattagaaccgggattttctt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29541546 tacaagtgactcacaaataggtttgccattgtggattagaaccgggattttctt 29541599  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 186 - 297
Target Start/End: Original strand, 29518136 - 29518247
Alignment:
Q  186 atataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatca 285  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| |||||| || |||||||||||||||||||||||| | || |||||||||||||||    
T  29518136 atataccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacctcatca 29518235  T
Q  286 atatactcaaca 297  Q
    ||||||| ||||    
T  29518236 atatactgaaca 29518247  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 29507196 - 29507302
Alignment:
Q  184 ttatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcat 283  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||| |||| || |||||||||||||| ||||||||| |||| |||||||||||||    
T  29507196 ttatataccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttatcattccaaacctcat 29507295  T
Q  284 caatata 290  Q
    |||||||    
T  29507296 caatata 29507302  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 184 - 297
Target Start/End: Original strand, 29535270 - 29535383
Alignment:
Q  184 ttatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcat 283  Q
    ||||||||||||||||||||||| |||||||| || |||||||||| |||||| || ||||||||||||||||||| |||| | || |||||||||||||    
T  29535270 ttatataccttcttatcaacataatcagcccagaacctagcttgtgatctctgataaggatcagaaggcaacaaagaagatttctcattccaaacctcat 29535369  T
Q  284 caatatactcaaca 297  Q
    ||||||||| ||||    
T  29535370 caatatactgaaca 29535383  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 29511018 - 29511122
Alignment:
Q  186 atataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatca 285  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| |||||| || |||||||||||||||||||||||| | || |||||||| ||||||    
T  29511018 atataccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatca 29511117  T
Q  286 atata 290  Q
    |||||    
T  29511118 atata 29511122  T

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Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 353
Target Start/End: Original strand, 29505391 - 29505545
Alignment:
Q  199 tcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaatatactcaacaa 298  Q
    |||||||||| || ||| ||| ||||||| | ||| ||||| |||||||||||||| ||||||||   ||| |||||||||||||||||||| |||||||    
T  29505391 tcaacatagttagtccagaatttagcttgggatctttggtaaggatcagaaggcaaaaaaggagaatgatcattccaaacctcatcaatatattcaacaa 29505490  T
Q  299 ttacaagtgactcacaaataggtttgccattgtggattagaaccgggattttctt 353  Q
    |    |||||||||||||| | ||||||||| ||||||||||| || ||||||||    
T  29505491 tatttagtgactcacaaatggatttgccattatggattagaactggaattttctt 29505545  T

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Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 29549036 - 29549137
Alignment:
Q  189 taccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaata 288  Q
    |||||||||||||| ||| ||||||||||||  |||||||| |||||| || |||||||||||||||||||||||| | || |||||||| |||||||||    
T  29549036 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 29549135  T
Q  289 ta 290  Q
    ||    
T  29549136 ta 29549137  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 353
Target Start/End: Complemental strand, 29490618 - 29490454
Alignment:
Q  189 taccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaata 288  Q
    |||||| ||||||| ||| ||| |||||||||||||||| |||||||  || |||||||||||||  || |||| | |||| |||||||||||||| |||    
T  29490618 tacctttttatcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctata 29490519  T
Q  289 tactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttctt 353  Q
    ||||  ||||| | |  ||| ||||||| |||||| ||||| || || ||||| || ||||||||    
T  29490518 tactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttctt 29490454  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 51266291 - 51266400
Alignment:
Q  190 accttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaatat 289  Q
    ||||| ||||||||| | |||||||||||||||||||| |||||||| |  ||||| |  |||| ||| |||| |  ||| ||||| ||||||||||| |    
T  51266291 accttattatcaacaaaatcagcccaaaatctagcttgagctctctgatgtggatcggtgggcagcaatggagtttgatctttccagacctcatcaatgt 51266390  T
Q  290 actcaacaat 299  Q
    | ||||||||    
T  51266391 attcaacaat 51266400  T

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Target: scaffold0186 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 9156 - 9189
Alignment:
Q  266 tatccttccaaacctcatcaatatactcaacaat 299  Q
    ||||||||||||||||||||||||| ||||||||    
T  9156 tatccttccaaacctcatcaatatattcaacaat 9189  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 18874653 - 18874686
Alignment:
Q  266 tatccttccaaacctcatcaatatactcaacaat 299  Q
    ||||||||||||||||||||||||| ||||||||    
T  18874653 tatccttccaaacctcatcaatatattcaacaat 18874686  T

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