View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_18 (Length: 347)
Name: NF20628_low_18
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 5 - 332
Target Start/End: Original strand, 15115196 - 15115523
Alignment:
| Q |
5 |
atggacatcatcacgaaaacaaagagtgtgcttactgatatcaaacttgataacacatccaagctagtgaaaaaggctatgcaagcacttgaaattgtaa |
104 |
Q |
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| T |
15115196 |
atggatatcatcacgaaaacaaagagtgtgcttactgatatcaaacttgataacacatccaagctagtgaaaaaggctatgcaagcacttgaaattgtaa |
15115295 |
T |
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| Q |
105 |
tcagaagtgtagcatttataggcgttccagttttcggatgtacaagagcgaaccaaggaggaatcatgtgcgaacgtgcgatgtgagcaatataacgcgc |
204 |
Q |
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| T |
15115296 |
tcagaagtgtagcatttataggcgttccagttttcggatgtacaagagcgaaccaaggaggaatcatgtgcgaacgtgcgatgtgagcaatataacgcgc |
15115395 |
T |
|
| Q |
205 |
ttgtcctaatcttcctactaaaagcactgttgtcatacctttcaatgcaccaaaagctactacatattttgcccaattcattccaactttctgaaatgca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15115396 |
ttgtcctaatcttcctactaaaagcactgttgtcatacctttcaatgcaccaaaagctactacatattttgcccaattcattccaactttctgaaatgca |
15115495 |
T |
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| Q |
305 |
actgagaaagctgcacctgtatctatat |
332 |
Q |
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| T |
15115496 |
actgagaaagctgcacctgtatctatat |
15115523 |
T |
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