View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_20 (Length: 337)
Name: NF20628_low_20
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 38886023 - 38886323
Alignment:
| Q |
19 |
gcatgagggtagcaaccctttagaagagacaagttcttcttttctcaatcttattatttatttcaactactttaaatatccatctcttaactcaagctat |
118 |
Q |
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| T |
38886023 |
gcatgagggtagcaaccctttagaagagacaagttcttcttttctcaatcttattatttatttcaactactttaaatatccatctcttaactcaagctat |
38886122 |
T |
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| Q |
119 |
ctctctctttgtctccctcttttggtttctgtttcatttcttttatacatagaaatggaataagggaggtacataagaaaatgactcagtgtagttaccc |
218 |
Q |
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| T |
38886123 |
ctctctctttgtctccctcttttggtttctgtttcatttcttttatacatagaaatggaataagggaggtacataagaaaatgactcagtgtagttaccc |
38886222 |
T |
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| Q |
219 |
tgaaaataatcatagtactatccttatggagagacgcaaagatagcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggtt |
318 |
Q |
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| T |
38886223 |
tgaaaataatcatagtactatccttatggagagacgcaaagatagcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggtt |
38886322 |
T |
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| Q |
319 |
c |
319 |
Q |
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| T |
38886323 |
c |
38886323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 30504521 - 30504578
Alignment:
| Q |
262 |
agcttaatcagaacttgtcctacatgtggtcatcatatcaaatgccaagatcaggttc |
319 |
Q |
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| T |
30504521 |
agcttaattagaacttgtctcacatgtggtcatcatatcaaaggccaagatcaggttc |
30504578 |
T |
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