View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_21 (Length: 328)
Name: NF20628_low_21
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 16288705 - 16288392
Alignment:
| Q |
7 |
cctagtccgcggtccacaaagatccctacagaacaaggtgcgtgttgaagaacattttcgtttatctcacaatgttcattgtggcttatttctggagaac |
106 |
Q |
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| T |
16288705 |
cctagtccgcggtccacaaagatccctacagaacaaggtgcgtgttgaagaacattttcgtttatctcacaatgttcattgtggcttatttctggagaac |
16288606 |
T |
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| Q |
107 |
ctcctactgttgagtactctttgtgaaagggaaggagaattaggctcgcgcgtttctcttcggctacgttgtagatgtcctcatggattgttgtatagga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16288605 |
ctcctactgttgagtactctttgtgaaagggaaggagaattaggctcgcacgtttctcttcggctacgttgtagatgtcctcatggattgttgtatagga |
16288506 |
T |
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| Q |
207 |
tgagacaacacttgatgtgtcaaatctaacagcattgtattgttctacaaattctttaaatgcagtagttatgatctcaaactctgcttttgggccatag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16288505 |
tgagacaacacttgatgtgtcaaatctaacagcattgtattgttctacaaattctttaaatgcagtagttatgatctcaaactctgcttttgggccatag |
16288406 |
T |
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| Q |
307 |
ttggttgtctctgc |
320 |
Q |
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|||||||| ||||| |
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| T |
16288405 |
ttggttgtttctgc |
16288392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 320
Target Start/End: Original strand, 17261058 - 17261371
Alignment:
| Q |
7 |
cctagtccgcggtccacaaagatccctacagaacaaggtgcgtgttgaagaacattttcgtttatctcacaatgttcattgtggcttatttctggagaac |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17261058 |
cctagtccgcggtccacaaagatccctacagaacaaggtgcgtgttgaagaacattttcgtttatctcacaatgttcattgcggcttatttctggagaac |
17261157 |
T |
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| Q |
107 |
ctcctactgttgagtactctttgtgaaagggaaggagaattaggctcgcgcgtttctcttcggctacgttgtagatgtcctcatggattgttgtatagga |
206 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17261158 |
ctcctaccgttgagtactctttgtgaaagggaaggagaattaggcttgcgcgtttctcttcggctacgttgtagatgtcctcatggattgttgtatagga |
17261257 |
T |
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| Q |
207 |
tgagacaacacttgatgtgtcaaatctaacagcattgtattgttctacaaattctttaaatgcagtagttatgatctcaaactctgcttttgggccatag |
306 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17261258 |
tgagacaacacttgatgtgtcaaacctaacagcattgtattgttctacaaattctttaaatgcagtagttatgatctcaaactctgcttttgggccatag |
17261357 |
T |
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| Q |
307 |
ttggttgtctctgc |
320 |
Q |
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|||||||| ||||| |
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| T |
17261358 |
ttggttgtttctgc |
17261371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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