View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20628_low_24 (Length: 280)
Name: NF20628_low_24
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 3378195 - 3377944
Alignment:
| Q |
19 |
gaaacacgcatgatcacaaagaaagagactcatctccgtggaaggaagatgaagatgaaagtaaggtattgtaccagcagtagacacaggagcagctgcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3378195 |
gaaacacgcatgatcacaaagaaagagactcatctccgtggaaggaagatgaagatgaaagtaaggtattgtaccagcagtagacacaggagcagctgcc |
3378096 |
T |
|
| Q |
119 |
attggcgttaatgttgaagtcacctcattttcccgcgttcttagcttctgctcggactgttcatttgccagaaaactgcttaccactacctgatacatat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3378095 |
attggcgttaatgttgaagtcacctcattttcccgcgttcttagcttctgctcggactgttcatttgccagaaaactgcttaccactacctgatacatat |
3377996 |
T |
|
| Q |
219 |
caatccactggaaagagtaacgaaaattgcatagacttgtcactgagaatta |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3377995 |
caatccactggaaagagtaacgaaaattgcatagacttgtcactgagaatta |
3377944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 3402116 - 3401865
Alignment:
| Q |
19 |
gaaacacgcatgatcacaaagaaagagactcatctccgtggaaggaagatgaagatgaaagtaaggtattgtaccagcagtagacacaggagcagctgcc |
118 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || | ||||||| |
|
|
| T |
3402116 |
gaaacgcgcatgatcacaaagaaagagaatcatctccgtggaaggaagatgaagatgagagttaggtattgtaccagcagtagacacgggtggagctgcc |
3402017 |
T |
|
| Q |
119 |
attggcgttaatgttgaagtcacctcattttcccgcgttcttagcttctgctcggactgttcatttgccagaaaactgcttaccactacctgatacatat |
218 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| | ||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
3402016 |
gttggcgttgatgttggagtcacctcattttcctgtgtttttagcatctgctcagactgttcatttcccagagaactgcttaccactacctgatacatat |
3401917 |
T |
|
| Q |
219 |
caatccactggaaagagtaacgaaaattgcatagacttgtcactgagaatta |
270 |
Q |
| |
|
||||||| |||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
3401916 |
caatccattggaaagagtaatgagaattgcatagacttgtcactgagaatta |
3401865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 30 - 237
Target Start/End: Complemental strand, 3373970 - 3373764
Alignment:
| Q |
30 |
gatcacaaagaaagagactcatctccgtggaaggaagatgaagatgaaag-taaggtattgtaccagcagtagacacaggagcagctgccattggcgtta |
128 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||||||| |||||| || | |||||||||||||||||||||||| |||||||||||| |||| || | |
|
|
| T |
3373970 |
gatcacaaagaaagaa--taatctccatggaaggaagatggagatgagaggttaggtattgtaccagcagtagacacgggagcagctgccgttggtgtaa |
3373873 |
T |
|
| Q |
129 |
atgttgaagtcacctcattttcccgcgttcttagcttctgctcggactgttcatttgccagaaaactgcttaccactacctgatacatatcaatccactg |
228 |
Q |
| |
|
|||||||| |||||||||| | ||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
3373872 |
cggttgaagttacctcatttttctgcgtttctagcttctgctcatgctgttcatttgccataaaactgccgaccactacctgatacatatcaatccattg |
3373773 |
T |
|
| Q |
229 |
gaaagagta |
237 |
Q |
| |
|
||||||||| |
|
|
| T |
3373772 |
gaaagagta |
3373764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 3403329 - 3403243
Alignment:
| Q |
176 |
tgttcatttgccagaaaactgcttaccactacctgatacatatcaatccactggaaagagtaacgaaaattgcatagacttgtcact |
262 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| | || ||||||||| |||||||||| |
|
|
| T |
3403329 |
tgttcacttggcagaaaactgcctaccactacctgatacatatcaatccattggaaagagtgatgataattgcataaacttgtcact |
3403243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University