View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20628_low_26 (Length: 255)

Name: NF20628_low_26
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20628_low_26
NF20628_low_26
[»] chr2 (9 HSPs)
chr2 (13-255)||(10378127-10378369)
chr2 (13-248)||(10342120-10342353)
chr2 (13-255)||(10369889-10370131)
chr2 (62-255)||(10339250-10339451)
chr2 (70-253)||(10345748-10345924)
chr2 (13-149)||(10350201-10350335)
chr2 (117-173)||(10363609-10363665)
chr2 (195-255)||(10363663-10363723)
chr2 (57-97)||(10363573-10363613)
[»] chr4 (1 HSPs)
chr4 (15-173)||(26573030-26573186)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 10378127 - 10378369
Alignment:
Q  13 aaaatcaccaaaaaagtatgagtttaaccttttatgcatatggtagagtactaaaggtcttagttctgcattccttcatcaatttcttcttccacattct 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378127 aaaatcaccaaaaaagtatgagtttgaccttttatgcatatggtagagtactaaaggtcttagttctgcattccttcatcaatttcttcttccacattct 10378226  T
Q  113 ctagaatttgtttcagaatgttttcttcctctgcttcaagcttttgcatacactgttcaaaggcagataccaactctgggctaaatatagaatcctcacg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10378227 ctagaatttgtttcagaatgttttcttcctctgcttcaagcttttgcatacactgttcaaaggcagataccaactctgggctaaatatagaatcctcaca 10378326  T
Q  213 agattcatttgcagtcctaatgttcatcgaagaatagcttcca 255  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  10378327 agattcatttgcattcctaatgttcatcgaagaatagcttcca 10378369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 10342120 - 10342353
Alignment:
Q  13 aaaatcaccaaaaaagtatgagtttaaccttttatgcatatggtagagtactaaaggtcttagttctgcattccttcatcaatttcttcttccacattct 112  Q
    ||||||||||||||||||||||||||||| |||||||||  |||| |||||||||   ||||||||| | ||||||||||||||||||||||||||||||    
T  10342120 aaaatcaccaaaaaagtatgagtttaaccatttatgcat--ggtaaagtactaaaatacttagttctactttccttcatcaatttcttcttccacattct 10342217  T
Q  113 ctagaatttgtttcagaatgttttcttcctctgcttcaagcttttgcatacactgttcaaaggcagataccaactctgggctaaatatagaatcctcacg 212  Q
    | |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10342218 caagaatttgtttcagaacgttttcttcatctgcttcaagctttcgcatacactgttcaaaggcagataccaactctgggctaaatatagaatcctcaca 10342317  T
Q  213 agattcatttgcagtcctaatgttcatcgaagaata 248  Q
    ||||||||||| | ||||||||||||| ||||||||    
T  10342318 agattcatttggattcctaatgttcattgaagaata 10342353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 10369889 - 10370131
Alignment:
Q  13 aaaatcaccaaaaaagtatgagtttaaccttttatgcatatggtagagtactaaaggtcttagttctgcattccttcatcaatttcttcttccacattct 112  Q
    ||||||||||||| ||||||| ||| |||||||||||||  ||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  10369889 aaaatcaccaaaagagtatgactttgaccttttatgcat--ggtggagcacttaagttcttagttctgcattccttcatcaatttcttcttccacattct 10369986  T
Q  113 ctagaatttgtttcagaatgttttcttcctctgcttcaagcttttgcatacactgttcaaaggcagataccaactctgggctaa--atatagaatcctca 210  Q
    ||||||||| |||||||| ||| ||||||||| |||||| ||||||||||||||||||||| ||| |||| |||||||  ||||  ||||||||||||||    
T  10369987 ctagaatttctttcagaacgttctcttcctcttcttcaaacttttgcatacactgttcaaaagcatatactaactctgaactaaatatatagaatcctca 10370086  T
Q  211 cgagattcatttgcagtcctaatgttcatcgaagaatagcttcca 255  Q
    | ||||||||||||| ||||||||||||| ||  |||||||||||    
T  10370087 ctagattcatttgcattcctaatgttcattgacaaatagcttcca 10370131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 62 - 255
Target Start/End: Original strand, 10339250 - 10339451
Alignment:
Q  62 actaaaggtcttagttctgcattccttcatcaatttcttcttccacattctctagaatttgtttcagaatgttttcttcctctgcttcaagcttttgcat 161  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10339250 actaaagttcttggttctgcattccttcatcaatttcttcttccacattctctagaatttgtttcagaatgttttcttcctcttcttcaagcttttgcat 10339349  T
Q  162 acactgttcaaaggcagataccaactctgggctaaatatagaatcctcacgagattcat--------ttgcagtcctaatgttcatcgaagaatagcttc 253  Q
    |||||||||||| |||||| |  || | || |||||||||||||| |||  || |||||        ||||| ||||||||||||| |||||||||||||    
T  10339350 acactgttcaaaagcagatgctgacacaggactaaatatagaatcatcattagtttcatttgcataattgcaatcctaatgttcattgaagaatagcttc 10339449  T
Q  254 ca 255  Q
    ||    
T  10339450 ca 10339451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 253
Target Start/End: Original strand, 10345748 - 10345924
Alignment:
Q  70 tcttagttctgcattccttcatcaatttcttcttccacattctctagaatttgtttcagaatgttttcttcctctgcttcaagcttttgcatacactgtt 169  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||  |||||  || |||||||||||||||||| |||||||||||||||       ||    
T  10345748 tcttagttctgcattccttcatcaattttttctttcacattctctgaaattttcttaagaatgttttcttcctcttcttcaagcttttgca-------tt 10345840  T
Q  170 caaaggcagataccaactctgggctaaatatagaatcctcacgagattcatttgcagtcctaatgttcatcgaagaatagcttc 253  Q
    |||| | |||||| ||| |||| |||||||||||||| |||| ||||||||||||| | |||||||| || ||| |||||||||    
T  10345841 caaaagaagatactaacgctggactaaatatagaatcatcacaagattcatttgcatttctaatgttaattgaacaatagcttc 10345924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 10350201 - 10350335
Alignment:
Q  13 aaaatcaccaaaaaagtatgagtttaaccttttatgcatatggtagagtactaaaggtcttagttctgcattccttcatcaatttcttcttccacattct 112  Q
    ||||||||||||| |||||||||||||||||||||||||  ||| |||  |||||| |||||||||||||||||||||||||||| ||||  ||||||||    
T  10350201 aaaatcaccaaaacagtatgagtttaaccttttatgcat--ggttgagccctaaagttcttagttctgcattccttcatcaattttttctgtcacattct 10350298  T
Q  113 ctagaatttgtttcagaatgttttcttcctctgcttc 149  Q
    ||  |||||  || |||||||||||||| ||| ||||    
T  10350299 ctgaaattttcttaagaatgttttcttcttcttcttc 10350335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 10363609 - 10363665
Alignment:
Q  117 aatttgtttcagaatgttttcttcctctgcttcaagcttttgcatacactgttcaaa 173  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10363609 aatttgtttcagaatgttttcttcatctgcttcaagcttttgcatacactgttcaaa 10363665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 10363663 - 10363723
Alignment:
Q  195 aaatatagaatcctcacgagattcatttgcagtcctaatgttcatcgaagaatagcttcca 255  Q
    |||||||||||||||   ||||||||||| | ||||||||||||| |||||||||||||||    
T  10363663 aaatatagaatcctccttagattcatttgtattcctaatgttcattgaagaatagcttcca 10363723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 10363573 - 10363613
Alignment:
Q  57 agagtactaaaggtcttagttctgcattccttcatcaattt 97  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  10363573 agagttctaaagttcttagttctgcattccttcatcaattt 10363613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 26573030 - 26573186
Alignment:
Q  15 aatcaccaaaaaagtatgagtttaaccttttatgcatatggtagagtactaaaggtcttagttctgcattccttcatcaatttcttcttccacattctct 114  Q
    ||||||||||| |||||||||||||||||||||||||  ||| |||  |||||| ||||||||||||| |||||||||||||| ||||| ||||||||||    
T  26573030 aatcaccaaaacagtatgagtttaaccttttatgcat--ggttgagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctct 26573127  T
Q  115 agaatttgtttcagaatgttttcttcctctgcttcaagcttttgcatacactgttcaaa 173  Q
      ||||||||| |||||| |||||| |||| |||||||||||||||||||| |||||||    
T  26573128 gaaatttgtttaagaatgatttctttctcttcttcaagcttttgcatacacagttcaaa 26573186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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