View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_3 (Length: 519)
Name: NF20628_low_3
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 22 - 511
Target Start/End: Complemental strand, 7471596 - 7471108
Alignment:
| Q |
22 |
atagttaatatgatattgcaaaagttttatcttgttgcaaagcaaaatgctaaattaattattgatactgtatagaaaccgaggcttggttcattgattc |
121 |
Q |
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| T |
7471596 |
atagttaatatgatattgcaaaagttttatcttgttgcaaagcaaaatgctaaattaattattgatactgtatagaaaccgaggcttggttcattgattc |
7471497 |
T |
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| Q |
122 |
ttttgaggaatggaggaaagccaaaaacctgagcaattttatacttctagggcattcttttggtggttatattgcttccaaatacgcgcttaaggtggaa |
221 |
Q |
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| T |
7471496 |
ttttgaggaatggaggaaagccaaaaacctgagcaattttatacttctagggcattcttttggtggttatattgcttccaaatacgcgcttaaggtggaa |
7471397 |
T |
|
| Q |
222 |
tctccttctacattgcattaaaaggacnnnnnnnnnncctcccttttctcttgcaaaaagataataattattattctgatatatcttttaatatttatgt |
321 |
Q |
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| T |
7471396 |
tctccttctacattgcattaaaaggacttttttttttc-tcccttttctctttcaaaaagataatacttattattctgatatatcttttaatatttatgt |
7471298 |
T |
|
| Q |
322 |
gtagcacccagagcacgtacagcacttggttttggtgggatctgctggattttcttctgaaacagagaggattacgaagttcttatcaacctggaaggga |
421 |
Q |
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| T |
7471297 |
gtagcacccagagcacgtacagcacttggttttggtgggatctgctggattttcttcggaaacagagaggattacgaagttcttatcaacctggaaggga |
7471198 |
T |
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| Q |
422 |
tcaatcctgaaccaaatatgggaatccaatttgacaccgcagacaattatcaggtaaaattacatttgtgccattgttcaagttcttctc |
511 |
Q |
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| T |
7471197 |
tcaatcctgaaccaaatatgggaatccaatttgacaccgcagacaattatcaggtaaaattacatttgtgccattgttcaagttcttctc |
7471108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 52872545 - 52872423
Alignment:
| Q |
95 |
agaaaccgaggcttggttcattgattcttttgaggaatggaggaaagccaaaaacctgagcaattttatacttctagggcattcttttggtggttatatt |
194 |
Q |
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|||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| || | |||||| ||||| || || |||||||||||||||||| || |
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| T |
52872545 |
agaaactgaggcatggttcattgattctttcgaggaatggagaaaagccaaaaatcttaccaatttcatactgcttggacattcttttggtggttatgtt |
52872446 |
T |
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| Q |
195 |
gcttccaaatacgcgcttaaggt |
217 |
Q |
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| T |
52872445 |
gcttccaaatacgcgctcaaggt |
52872423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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