View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20628_low_30 (Length: 245)

Name: NF20628_low_30
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20628_low_30
NF20628_low_30
[»] chr4 (5 HSPs)
chr4 (1-230)||(26720741-26720970)
chr4 (38-188)||(8541278-8541428)
chr4 (105-189)||(37618670-37618754)
chr4 (21-75)||(44161950-44162004)
chr4 (103-149)||(44161166-44161212)
[»] chr1 (4 HSPs)
chr1 (1-202)||(45117954-45118155)
chr1 (9-100)||(19769218-19769309)
chr1 (105-189)||(6919885-6919971)
chr1 (105-189)||(38239906-38239992)
[»] chr2 (3 HSPs)
chr2 (1-190)||(2985921-2986110)
chr2 (13-127)||(10495983-10496097)
chr2 (157-202)||(2985882-2985927)
[»] chr8 (2 HSPs)
chr8 (38-188)||(23820613-23820763)
chr8 (38-188)||(40172843-40172993)
[»] scaffold0036 (1 HSPs)
scaffold0036 (9-106)||(98110-98207)
[»] scaffold0004 (1 HSPs)
scaffold0004 (9-82)||(246442-246515)
[»] chr3 (2 HSPs)
chr3 (105-167)||(53537276-53537338)
chr3 (116-156)||(53689636-53689676)
[»] scaffold0275 (1 HSPs)
scaffold0275 (89-159)||(23003-23073)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26720970 - 26720741
Alignment:
Q  1 ttcctcgcactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26720970 ttcctcgcactggcgcatggtgttggtgttgaatgaacgggaatcaaaagaggcaacgggatgaagagacctagagaggtggtcgcaagagaaaattcac 26720871  T
Q  101 tactgacggtggaggtcgagtcgacgaaggcgagggataagaggagaaatacgactgtgaaagtagagaagacattgaagagagtgaaagcttcttctcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  26720870 tactgacggtggaggtcgagtcgacgaaggcgagggataagaggagaaatacaactgtgaaagtagagaagacatggaagagagtgaaagcttcttctcc 26720771  T
Q  201 gcttcaattcctccgatgcttcttccttct 230  Q
    ||||||||||||||||||||||||||||||    
T  26720770 gcttcaattcctccgatgcttcttccttct 26720741  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 8541428 - 8541278
Alignment:
Q  38 cgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattcactactgacggtggaggtcgagtcgacgaaggcgaggga 137  Q
    |||||| || |||||||||| ||| | ||||| |||||||||||| |||| |||||||| |||  ||||||||||||||||||||||||| |||||  ||    
T  8541428 cgggaaacggaagaggcaactggacggagagagctagagaggaggccgcaggagaaaatccaccgctgacggtggaggtcgagtcgacgacggcgaaaga 8541329  T
Q  138 taagaggagaaatacgactgtgaaagtagagaagacattgaagagagtgaa 188  Q
    | ||| ||||||||||||||||||||| || ||||||| ||||||||||||    
T  8541328 tgagaagagaaatacgactgtgaaagtggaaaagacatggaagagagtgaa 8541278  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 37618670 - 37618754
Alignment:
Q  105 gacggtggaggtcgagtcgacgaaggcgagggataagaggagaaatacgactgtgaaagtagagaagacattgaagagagtgaaa 189  Q
    ||||||||  || |||||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  37618670 gacggtggcagttgagtcgacgacggcgagggatgagaggagaaatacgacggtgaaagtagaaaagacatggaagagagtgaaa 37618754  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 44162004 - 44161950
Alignment:
Q  21 tgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctaga 75  Q
    |||||||||||||||||||||||||| |||| |||||||||   |||||||||||    
T  44162004 tgttggtgttgaatgaacgggaagcggaagaagcaacgggacatagagacctaga 44161950  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 44161212 - 44161166
Alignment:
Q  103 ctgacggtggaggtcgagtcgacgaaggcgagggataagaggagaaa 149  Q
    |||||||||| |||||||||||||| ||| |||||| ||||||||||    
T  44161212 ctgacggtggcggtcgagtcgacgacggccagggatgagaggagaaa 44161166  T

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Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 45117954 - 45118155
Alignment:
Q  1 ttcctcgcactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattcac 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  45117954 ttcctcgtactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggctgcaggagaaaattcac 45118053  T
Q  101 tactgacggtggaggtcgagtcgacgaaggcgagggataagaggagaaatacgactgtgaaagtagagaagacattgaagagagtgaaagcttcttctcc 200  Q
      |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  45118054 cgctgacggtggaggtcgagtcgacgaaggcgagggatgagaggagaaatacgattgtgaaagtagagaagacatggaagagagtgaaagcttctcctcc 45118153  T
Q  201 gc 202  Q
    ||    
T  45118154 gc 45118155  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 19769309 - 19769218
Alignment:
Q  9 actggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattcac 100  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| || | ||||||||||||    
T  19769309 actggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggaaggagagacctagagaggaggccggaggagaaaattcac 19769218  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 6919971 - 6919885
Alignment:
Q  105 gacggtggaggtcgagtcgacgaaggcgagggataagaggagaaatacgactgtgaaagtagagaagac--attgaagagagtgaaa 189  Q
    |||||||| |||| ||||||||| |||||||||| |||||||||| |||| |||||||||||| |||||  || |||||||||||||    
T  6919971 gacggtggcggtcaagtcgacgacggcgagggatgagaggagaaacacgattgtgaaagtagaaaagacgtatggaagagagtgaaa 6919885  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 38239906 - 38239992
Alignment:
Q  105 gacggtggaggtcgagtcgacgaaggcgagggataagaggagaaatacgactgtgaaagtagagaagac--attgaagagagtgaaa 189  Q
    |||||||| |||| ||||||||| |||||||||| |||||||||| |||| |||||||||||| |||||  || |||||||||||||    
T  38239906 gacggtggcggtcaagtcgacgacggcgagggatgagaggagaaacacgattgtgaaagtagaaaagacgtatggaagagagtgaaa 38239992  T

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Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 2986110 - 2985921
Alignment:
Q  1 ttcctcgcactggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattcac 100  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  2986110 ttcctcgtactggcgcatgatgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggcagcaggagaaaattcac 2986011  T
Q  101 tactgacggtggaggtcgagtcgacgaaggcgagggataagaggagaaatacgactgtgaaagtagagaagacattgaagagagtgaaag 190  Q
      |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  2986010 cgctgacggtggaggtcgagtcgacgaaggcgagggatgagaggagaaatacgattgtgaaagtagagaagacatggaagagagtgaaag 2985921  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 10495983 - 10496097
Alignment:
Q  13 gcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattcactactgacggtgg 112  Q
    |||||||||||| |||||||||||||||||| |  |||||||||||||||  ||||||||| |||||||| |||  |||||||||||    |||||||||    
T  10495983 gcgcatggtgttagtgttgaatgaacgggaaacagaagaggcaacgggatagagagacctatagaggaggccgcgggagaaaattcaacgttgacggtgg 10496082  T
Q  113 aggtcgagtcgacga 127  Q
     ||||||||| ||||    
T  10496083 cggtcgagtcaacga 10496097  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 2985927 - 2985882
Alignment:
Q  157 gtgaaagtagagaagacattgaagagagtgaaagcttcttctccgc 202  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  2985927 gtgaaagtagagaagacatggaagagagtgaaagcttcttctccgc 2985882  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 23820763 - 23820613
Alignment:
Q  38 cgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattcactactgacggtggaggtcgagtcgacgaaggcgaggga 137  Q
    |||||| || |||||||||| ||| | ||||| |||||||||||| |||| |||||||| |||  |||||||||| |||||||||||||| |||||  ||    
T  23820763 cgggaaacggaagaggcaactggacggagagagctagagaggaggccgcaggagaaaatccaccgctgacggtggcggtcgagtcgacgacggcgaaaga 23820664  T
Q  138 taagaggagaaatacgactgtgaaagtagagaagacattgaagagagtgaa 188  Q
    | ||| ||||||||||||||||||||| || ||||||| ||||||||||||    
T  23820663 tgagaagagaaatacgactgtgaaagtggaaaagacatggaagagagtgaa 23820613  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 40172843 - 40172993
Alignment:
Q  38 cgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattcactactgacggtggaggtcgagtcgacgaaggcgaggga 137  Q
    |||||| || |||||||||| ||| | ||||| |||||||||||| |||| |||||||| |||  |||||||||| |||||||||||||| |||||  ||    
T  40172843 cgggaaacggaagaggcaactggacggagagagctagagaggaggccgcaggagaaaatccaccgctgacggtggcggtcgagtcgacgacggcgaaaga 40172942  T
Q  138 taagaggagaaatacgactgtgaaagtagagaagacattgaagagagtgaa 188  Q
    | ||| ||||||||||||||||||||| || ||||||| ||||||||||||    
T  40172943 tgagaagagaaatacgactgtgaaagtggaaaagacatggaagagagtgaa 40172993  T

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Target: scaffold0036 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 98207 - 98110
Alignment:
Q  9 actggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggaggtcgcaagagaaaattcactactga 106  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||| |  | ||||||||||||| ||||    
T  98207 actggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacgggacagagagacctagagaggaggccagaggagaaaattcactgctga 98110  T

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Target: scaffold0004 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 246515 - 246442
Alignment:
Q  9 actggcgcatggtgttggtgttgaatgaacgggaagcgaaagaggcaacgggatgaagagacctagagaggagg 82  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||| ||| | |||||||| |||||||||    
T  246515 actggcgcatggcgttggtgttgaatgaacgggaagcggaagaggcaacaggacggagagacctggagaggagg 246442  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 53537338 - 53537276
Alignment:
Q  105 gacggtggaggtcgagtcgacgaaggcgagggataagaggagaaatacgactgtgaaagtaga 167  Q
    |||||||| |||| ||||||||| |||||||||| |||||||||| |||||||||||||||||    
T  53537338 gacggtggcggtcaagtcgacgacggcgagggatgagaggagaaacacgactgtgaaagtaga 53537276  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 53689676 - 53689636
Alignment:
Q  116 tcgagtcgacgaaggcgagggataagaggagaaatacgact 156  Q
    |||||||||||| ||||||||||  ||||||||||||||||    
T  53689676 tcgagtcgacgacggcgagggatgggaggagaaatacgact 53689636  T

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Target: scaffold0275 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 23073 - 23003
Alignment:
Q  89 gagaaaattcactactgacggtggaggtcgagtcgacgaaggcgagggataagaggagaaatacgactgtg 159  Q
    ||||||||||||  |||||||||| |||| |||| |||| | | |||||| ||||||||||||||||||||    
T  23073 gagaaaattcaccgctgacggtggcggtcaagtccacgacgaccagggatgagaggagaaatacgactgtg 23003  T

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