View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_31 (Length: 240)
Name: NF20628_low_31
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 46184455 - 46184302
Alignment:
| Q |
70 |
ttcatgtattggcatcaataggaaccgtgnnnnnnn-taaggcaagagcatttatttttagttttgcaatcagacatttctggcaggaccagttagtttg |
168 |
Q |
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| T |
46184455 |
ttcatgtattggcatcaataggaaccgtgaaaaaaaataaggcaagagcatttatttttagttttgcaatcagacatttctggcaggaccagttagtttg |
46184356 |
T |
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| Q |
169 |
tcttatagcatgtcattcggttcattgnnnnnnnnctaagcgaaatcaagcttc |
222 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46184355 |
tcttatagcatgtcattcggttcattgttttttttctaagcgaaatcaagcttc |
46184302 |
T |
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