View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_34 (Length: 237)
Name: NF20628_low_34
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10378349 - 10378569
Alignment:
| Q |
1 |
ttcatcgaagaatagcttccaaattttggtgtgacataagatccaggagagtatattccatctgcaggaagccattctttaagactagtaatggctggag |
100 |
Q |
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| T |
10378349 |
ttcatcgaagaatagcttccaaattttggtgtgacataagatccaggagagtatattccatctgcaggaagccattctttaagactagtaatggctgaag |
10378448 |
T |
|
| Q |
101 |
attcaacattggatggaactctaagggattctagtctatttgctatagcctttctcttatttcccttctcaagcattcttgttttatgacttggaactct |
200 |
Q |
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| T |
10378449 |
attcaacattggatggaactctaagggactctagtctatttgctatagcctttctcttatttcccttctcaagcatttttgttttatgacttggaaccct |
10378548 |
T |
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| Q |
201 |
ttcctcattcttcttgtttaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
10378549 |
ttcctcattcttcttgtttaa |
10378569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 10342353 - 10342501
Alignment:
| Q |
12 |
atagcttccaaattttggtgtgacataagatccaggagagta----tattccatctgcaggaagccattctttaagactagtaatggctggagattcaac |
107 |
Q |
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| T |
10342353 |
atagcttccaaattttggtgtgacataagatcaaggagagtaggtttattccatcttcaggaagccattctctaagactagcaatgtctgtagattcaac |
10342452 |
T |
|
| Q |
108 |
attggatggaactctaagggattctagtctatttgctatagcctttctc |
156 |
Q |
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| T |
10342453 |
attggatggaactccaagggattctagtctatttgctatagcccttctc |
10342501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 10363703 - 10363870
Alignment:
| Q |
1 |
ttcatcgaagaatagcttccaaattttggtgtgacataagatccaggagagta----tattccatctgcaggaagccattctttaagactagtaatggct |
96 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| | |||||||| |||||||||| ||| ||||||||| ||||| | |
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| T |
10363703 |
ttcattgaagaatagcttccaaattttagtgtgacataagatcaaggagagtaggtgttttccatcttcaggaagccactctctaagactagcaatggtt |
10363802 |
T |
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| Q |
97 |
ggagattcaacattggatggaactctaagggattctagtctatttgctatagcctttctcttatttcccttctca |
171 |
Q |
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| T |
10363803 |
ggagattcaacattggatggaact-------attctagtctatttgctacagccttgctcttacttcccttctca |
10363870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10339431 - 10339484
Alignment:
| Q |
1 |
ttcatcgaagaatagcttccaaattttggtgtgacataagatccaggagagtat |
54 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10339431 |
ttcattgaagaatagcttccaaattttggtgtgacataagatccaggagagtat |
10339484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 10345916 - 10345959
Alignment:
| Q |
11 |
aatagcttccaaattttggtgtgacataagatccaggagagtat |
54 |
Q |
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| T |
10345916 |
aatagcttctaaatttgggtgtgacataagatcgaggagagtat |
10345959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 10342494 - 10342528
Alignment:
| Q |
163 |
cccttctcaagcattcttgttttatgacttggaac |
197 |
Q |
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| T |
10342494 |
cccttctcaagcatttttgttttatgacttggaac |
10342528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 10370121 - 10370162
Alignment:
| Q |
11 |
aatagcttccaaattttggtgtgacataagatccaggagagtat |
54 |
Q |
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| T |
10370121 |
aatagcttccaaattttg--gtgacataagatccagaagagtat |
10370162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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