View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_35 (Length: 237)
Name: NF20628_low_35
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_35 |
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| [»] scaffold0039 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 23576884 - 23576762
Alignment:
| Q |
99 |
ttatgtattgcctcaaatggtcattatttgtggtgatgtattagaggatgattgggtaatcccatgtacgacatggccaagggtctgtttggttcaaaat |
198 |
Q |
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| T |
23576884 |
ttatgcattgcctcaaatggtcattatttgtggtgatgtattagaggatgattgggtaatcccatgttcgacatggccaagggtctgtttggttcaaaat |
23576785 |
T |
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| Q |
199 |
tttgaatgacgggagatatttta |
221 |
Q |
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| T |
23576784 |
tttgaatgatgggagatatttta |
23576762 |
T |
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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 19417143 - 19417044
Alignment:
| Q |
1 |
ttgctgttagtaaggaaacatgtgatacaagtgttccttaattctataacaacctatatacaagtgtaccttaattatagtgcaacctatattatctatt |
100 |
Q |
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| T |
19417143 |
ttgctgttagtaaggaaacatgtgatacaagtgttccttaattctataacaacctatatacaagtgtaccttaattatagtgcaacctatattatctatt |
19417044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 57912 - 58014
Alignment:
| Q |
1 |
ttgctgttagtaaggaaacatgtgatacaagtgttccttaattctataacaacctatatacaagtgtaccttaattatagtgcaacctatattatctatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
57912 |
ttgctgttagtaaggaaacatgtgatacaagtgttccttaattctataacaacctatatacacgtgtaccttaattatagtgcaacctattttatctatt |
58011 |
T |
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| Q |
101 |
atg |
103 |
Q |
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||| |
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| T |
58012 |
atg |
58014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 62348 - 62449
Alignment:
| Q |
1 |
ttgctgttagtaaggaaacatgtgatacaagtgttccttaattctataacaacctatatacaagtgtaccttaattatagtgcaacctatattatctatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
62348 |
ttgctgttagtaaggaaacatgtgatacaagtgttccttaattctataacaatctatatacacgtgtaccttaattatagtgcaacctatattatctatt |
62447 |
T |
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| Q |
101 |
at |
102 |
Q |
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|| |
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| T |
62448 |
at |
62449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 62502 - 62567
Alignment:
| Q |
37 |
cttaattctataacaacctatatacaagtgtaccttaattatagtgcaacctatattatctattat |
102 |
Q |
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| T |
62502 |
cttaattctataacaacctatatacacgtgtaccttaattatagtgcaacctatattatctattat |
62567 |
T |
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