View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_5 (Length: 487)
Name: NF20628_low_5
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 37844177 - 37844643
Alignment:
| Q |
1 |
catgcaccaataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatatatcaaagttctgtcgatgttagacatc |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
37844177 |
catgcaccgataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatgtatcgaagttctgtcgatgttagacatc |
37844276 |
T |
|
| Q |
101 |
aacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaatagcaagtgtataccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844277 |
aacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaatagcaagtgtataccaaa |
37844376 |
T |
|
| Q |
201 |
taatcatcggcttttgattgtactataccttggacctaattcatgtatcttacttttcatatagtcatgcatctttactttgctatcttgtctcattagc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37844377 |
taatcatcggcttttgattgtactataccttggacctaattcatgtatcttacttttcatatagtcatgcatcttcactttgctatcttgtctcattagc |
37844476 |
T |
|
| Q |
301 |
atcaaaggctataacatattgtataagtttgatgtatcaaagaagaaaactattagtagtctaccatattgctaattatatgttgcatttgctatccaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844477 |
atcaaaggctataacatattgtataagtttgatgtatcaaagaagaaaactat--gtagtctaccatattgctaattatatgttgcatttgctatccaaa |
37844574 |
T |
|
| Q |
401 |
agttttatgattcttcaaactcagttccttcgtctaccaaattattaaccagtctcggaaaacaattac |
469 |
Q |
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| T |
37844575 |
agttttatgattcttcaaactcagttccttcgtctaccaaattattaaccagtctcggaaaacaattac |
37844643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 16330969 - 16331029
Alignment:
| Q |
11 |
taccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat |
71 |
Q |
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|||||||||||| |||| || |||||||||||||| ||||||||||| |||||||||||| |
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| T |
16330969 |
taccgacatgtagacactagtaataatttaagaaaatgaaaatgattaaatgtaaccacat |
16331029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 16567286 - 16567342
Alignment:
| Q |
15 |
gacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat |
71 |
Q |
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|||||||| ||||| | |||||||||||||| || ||||||||| |||||||||||| |
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| T |
16567286 |
gacatgtagacacatgcaataatttaagaaaatggaaatgattgaatgtaaccacat |
16567342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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