View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20628_low_8 (Length: 422)
Name: NF20628_low_8
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 33277831 - 33277436
Alignment:
| Q |
19 |
gaaaactcttttacacttgtttggtgttccgttcnnnnnnnatcaaatagtttggtggagagaatcacacactaagtgtgtagaagtgtggaattccggg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33277831 |
gaaaactcttttacacttgtttggtgttccattctttttttgtcaaatagtttggtggagagaatcacacactaagtgtgtagaattgtggaattccggg |
33277732 |
T |
|
| Q |
119 |
tttcaaccctagagatttactctttttgtttgctgaatagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgca |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33277731 |
tttcaaccctaaagatttactctttttgtttgctgaatagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgca |
33277632 |
T |
|
| Q |
219 |
cattacaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccaggtatgtaagtttaaacatttgatgttccaca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33277631 |
cattacaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccaggtatgtaagtttaaacatttgatgttccaca |
33277532 |
T |
|
| Q |
319 |
attttgacattcacattttatgttacatttttaatttaatttgattgttatatgtagtgggaatttcaagtaggtccagttgttggcatctctgct |
414 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33277531 |
attttgacattcacaatttatgttacatttttaatttaatttgattggtatatgtagtgggaatttcaagtaggtccagttgttggcatctctgct |
33277436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 281
Target Start/End: Complemental strand, 29442226 - 29442092
Alignment:
| Q |
147 |
tttgctgaatagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggca |
246 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||| |||||||| || ||||| |||||||| ||||||||||||| || |||||||| |||| |
|
|
| T |
29442226 |
tttgctcaatagggaccatactattgtggtgctggtgctgacaaggcatttggccgtgacattgttgactcacattacaaagcctgtctttatgccggca |
29442127 |
T |
|
| Q |
247 |
ttaacatcagtggtgttaatggagaagttatgcct |
281 |
Q |
| |
|
| ||||||||||| | ||||| ||||| |||||| |
|
|
| T |
29442126 |
tcaacatcagtggaatcaatggtgaagtgatgcct |
29442092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 26249334 - 26249200
Alignment:
| Q |
157 |
agggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatcag |
256 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| || || | || ||||| ||||||||||||||||||||||| || |||||||||||||||||||| || |
|
|
| T |
26249334 |
agggcccatattattgtgggattggtgctgataaagcctatggtcgtgacattgttgatgcacattacaaagcttgtctttatgctggcattaacattag |
26249235 |
T |
|
| Q |
257 |
tggtgttaatggagaagttatgcctagccaggtat |
291 |
Q |
| |
|
||| | |||||||| ||||||||| | ||||||| |
|
|
| T |
26249234 |
tggcatcaatggagaggttatgcctggtcaggtat |
26249200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 7192841 - 7192763
Alignment:
| Q |
212 |
tgatgcacattacaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccaggta |
290 |
Q |
| |
|
|||||| |||||||| || || | |||||||| ||||||||||||||| ||||| ||| ||||||||| |||||||| |
|
|
| T |
7192841 |
tgatgctcattacaaggcttgtttatatgctggaattaacatcagtggtactaatgcagaggttatgcctggccaggta |
7192763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University