View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20628_low_9 (Length: 409)
Name: NF20628_low_9
Description: NF20628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20628_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 39 - 359
Target Start/End: Complemental strand, 37129426 - 37129099
Alignment:
| Q |
39 |
tgaaataccttgtgcaaaattcctaatccaacgatttatcaagaatttttcacatcttgagagatatagatagagagattggattaggaatatggttttt |
138 |
Q |
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| T |
37129426 |
tgaaataccttgtgcaaaattcctaatccaacgatttatcaagaatttttcacatcttgagagatatagatagagagataggattaggaatatggttttt |
37129327 |
T |
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| Q |
139 |
gaaatataaatatgagatgacgtttttggca-------nnnnnnnnnaattagtgttgcagggtgtaaccagaaataaaggatgtaaatagcacaaatga |
231 |
Q |
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| T |
37129326 |
gaaatataaatatgatatgacgtttttggcatttttttttgtttttgaattagtgttggagggtgtaaccagaagtaaaggatgtaaatagcacaaatgg |
37129227 |
T |
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| Q |
232 |
gaatatattttgtgtttagacggtttcatgtatcctt-nnnnnnnntgatgaaaattgctcttcttccttnnnnnnntgttcactttcacgtaaattgat |
330 |
Q |
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| T |
37129226 |
gaatatattttgtgttcagacggtttcatgaatccttaaaaaaaaatgatgaaaattactctttttcctt-aaaaaatgttcacttccacgtgaattaat |
37129128 |
T |
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| Q |
331 |
taaaatatatccatgtgagttaattcatg |
359 |
Q |
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| T |
37129127 |
taaaatatctccacgtgagttaattcatg |
37129099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 37121323 - 37121080
Alignment:
| Q |
20 |
ctatggaatggaatgttaatgaaataccttgtgcaaaattcctaatccaacgatttatcaagaatttttcacatcttgagagatatagatagagagattg |
119 |
Q |
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| T |
37121323 |
ctatgaaatggaatgttaatgaaataccttatgcaaaatttctaattcaacgatttttcaagaatttttcacaccttgag------aggtagagagattg |
37121230 |
T |
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| Q |
120 |
gattaggaatatggtttttgaaatataaatatgagatgacgtttttgg----cannnnnnnnnaattagtgttgcagggtgtaaccagaaataaaggatg |
215 |
Q |
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| T |
37121229 |
gattacaaaaatggtttttaaaaaataaatatgagatggcgtttttggtatttaaatttttgtaattagtattgaagggtgtaaccagaaataaaggata |
37121130 |
T |
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| Q |
216 |
taaatagcacaaatgaga--atatattttgtgtttagacggtttcatgta |
263 |
Q |
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| T |
37121129 |
taaatagcacaaatgagaatatatattttgtgttgagacggtttaatgta |
37121080 |
T |
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