View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20629_low_1 (Length: 306)

Name: NF20629_low_1
Description: NF20629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20629_low_1
NF20629_low_1
[»] chr8 (28 HSPs)
chr8 (19-196)||(9625287-9625464)
chr8 (195-302)||(9624962-9625069)
chr8 (19-139)||(28526394-28526513)
chr8 (19-197)||(31075140-31075317)
chr8 (76-197)||(31074090-31074211)
chr8 (19-145)||(24199078-24199205)
chr8 (52-176)||(45476445-45476569)
chr8 (50-141)||(39138544-39138635)
chr8 (50-176)||(28524875-28525001)
chr8 (49-102)||(32898344-32898397)
chr8 (19-62)||(12637589-12637632)
chr8 (51-177)||(28005459-28005586)
chr8 (51-177)||(28062762-28062889)
chr8 (50-97)||(28619432-28619479)
chr8 (52-102)||(1952872-1952922)
chr8 (50-103)||(41121295-41121348)
chr8 (66-177)||(33314974-33315085)
chr8 (52-143)||(45476312-45476403)
chr8 (52-102)||(10407486-10407536)
chr8 (52-102)||(35178707-35178757)
chr8 (43-160)||(12637634-12637751)
chr8 (16-65)||(28006426-28006475)
chr8 (16-65)||(28063729-28063778)
chr8 (17-62)||(28525025-28525070)
chr8 (49-134)||(41754127-41754212)
chr8 (51-132)||(41754687-41754768)
chr8 (47-103)||(2552203-2552259)
chr8 (50-102)||(35177565-35177617)
[»] chr2 (32 HSPs)
chr2 (16-193)||(14887344-14887521)
chr2 (20-197)||(26585174-26585348)
chr2 (49-176)||(34037552-34037679)
chr2 (19-176)||(18676672-18676829)
chr2 (49-197)||(37607198-37607346)
chr2 (80-197)||(12746111-12746228)
chr2 (119-196)||(15441920-15441997)
chr2 (50-197)||(34582550-34582697)
chr2 (52-102)||(40000237-40000287)
chr2 (45-150)||(31442474-31442579)
chr2 (50-103)||(43380757-43380810)
chr2 (52-176)||(21733653-21733777)
chr2 (50-122)||(33161939-33162011)
chr2 (26-140)||(14886610-14886724)
chr2 (50-196)||(18675181-18675326)
chr2 (50-103)||(21732285-21732338)
chr2 (50-103)||(32765107-32765160)
chr2 (50-98)||(2910275-2910323)
chr2 (50-102)||(14704176-14704228)
chr2 (85-197)||(26586210-26586322)
chr2 (112-176)||(38853872-38853936)
chr2 (51-106)||(17466228-17466283)
chr2 (45-103)||(17330114-17330172)
chr2 (52-102)||(24459356-24459406)
chr2 (52-102)||(31091429-31091479)
chr2 (19-69)||(34582482-34582532)
chr2 (52-102)||(39015176-39015226)
chr2 (52-102)||(39016285-39016335)
chr2 (50-103)||(5914912-5914965)
chr2 (50-103)||(12010229-12010282)
chr2 (49-102)||(24458231-24458284)
chr2 (51-103)||(31443126-31443178)
[»] chr7 (29 HSPs)
chr7 (19-197)||(25621567-25621748)
chr7 (50-197)||(24287576-24287723)
chr7 (88-197)||(8879461-8879570)
chr7 (50-144)||(8870126-8870222)
chr7 (45-103)||(8375498-8375556)
chr7 (50-197)||(8870907-8871056)
chr7 (54-164)||(22621256-22621366)
chr7 (45-103)||(2677106-2677164)
chr7 (52-102)||(7258446-7258496)
chr7 (52-102)||(48647345-48647395)
chr7 (52-102)||(48788574-48788624)
chr7 (45-198)||(32793266-32793419)
chr7 (50-106)||(385529-385585)
chr7 (50-102)||(42478170-42478222)
chr7 (50-102)||(44334350-44334402)
chr7 (59-102)||(42477551-42477594)
chr7 (52-99)||(44333311-44333358)
chr7 (50-96)||(8375076-8375122)
chr7 (56-102)||(10894514-10894560)
chr7 (52-102)||(10898975-10899025)
chr7 (118-196)||(24288814-24288892)
chr7 (52-102)||(35728988-35729038)
chr7 (74-164)||(39824258-39824348)
chr7 (50-103)||(6680413-6680466)
chr7 (50-103)||(8048664-8048717)
chr7 (50-103)||(43461617-43461670)
chr7 (79-175)||(27067900-27067996)
chr7 (79-175)||(27210317-27210413)
chr7 (50-102)||(30924909-30924961)
[»] chr1 (26 HSPs)
chr1 (50-197)||(8975255-8975402)
chr1 (50-197)||(29766019-29766166)
chr1 (50-197)||(50107083-50107230)
chr1 (49-176)||(22856797-22856922)
chr1 (50-197)||(11060665-11060811)
chr1 (20-103)||(44720697-44720780)
chr1 (50-136)||(6612567-6612653)
chr1 (45-103)||(25038071-25038129)
chr1 (45-103)||(25043283-25043341)
chr1 (50-103)||(3117839-3117892)
chr1 (112-197)||(33342512-33342597)
chr1 (45-103)||(16249833-16249891)
chr1 (51-164)||(39725468-39725582)
chr1 (20-61)||(11059869-11059910)
chr1 (50-103)||(34085712-34085765)
chr1 (50-103)||(51450190-51450243)
chr1 (50-102)||(7944326-7944378)
chr1 (50-102)||(9339817-9339869)
chr1 (48-103)||(1407818-1407873)
chr1 (52-102)||(7945456-7945506)
chr1 (52-102)||(9340927-9340977)
chr1 (49-106)||(11830076-11830133)
chr1 (50-102)||(32665669-32665722)
chr1 (51-164)||(39726568-39726680)
chr1 (49-102)||(52439632-52439685)
chr1 (137-197)||(1001869-1001929)
[»] chr5 (21 HSPs)
chr5 (58-197)||(35538189-35538328)
chr5 (53-176)||(32555430-32555552)
chr5 (50-109)||(16611872-16611931)
chr5 (50-167)||(34173386-34173503)
chr5 (50-102)||(2464840-2464892)
chr5 (52-102)||(4593031-4593081)
chr5 (52-102)||(8074621-8074671)
chr5 (52-102)||(8075735-8075785)
chr5 (52-102)||(32640459-32640509)
chr5 (50-103)||(13651041-13651094)
chr5 (84-176)||(21069406-21069498)
chr5 (52-102)||(545938-545988)
chr5 (52-102)||(14889940-14889990)
chr5 (52-102)||(14891049-14891099)
chr5 (52-102)||(25590601-25590651)
chr5 (52-102)||(28589870-28589920)
chr5 (20-62)||(28865116-28865158)
chr5 (52-102)||(40611431-40611481)
chr5 (52-102)||(40612561-40612611)
chr5 (128-197)||(30970543-30970612)
chr5 (43-103)||(16979182-16979242)
[»] chr4 (14 HSPs)
chr4 (50-197)||(21621919-21622066)
chr4 (52-197)||(26172822-26172969)
chr4 (76-197)||(21623023-21623144)
chr4 (51-176)||(2786340-2786465)
chr4 (76-197)||(32244370-32244491)
chr4 (85-197)||(32244603-32244715)
chr4 (86-197)||(24753477-24753588)
chr4 (117-196)||(26170737-26170816)
chr4 (45-103)||(19050426-19050484)
chr4 (52-102)||(47878386-47878436)
chr4 (50-102)||(42278220-42278272)
chr4 (50-102)||(47874734-47874786)
chr4 (54-109)||(48739944-48739999)
chr4 (58-103)||(42391794-42391839)
[»] chr3 (24 HSPs)
chr3 (57-197)||(40205978-40206118)
chr3 (46-103)||(45599054-45599111)
chr3 (50-102)||(53957844-53957896)
chr3 (50-103)||(33427901-33427954)
chr3 (50-102)||(48574359-48574411)
chr3 (50-102)||(55388230-55388282)
chr3 (50-105)||(33837331-33837386)
chr3 (52-102)||(48808543-48808593)
chr3 (50-103)||(612404-612457)
chr3 (50-103)||(19114683-19114736)
chr3 (50-103)||(19115067-19115120)
chr3 (50-103)||(47075271-47075324)
chr3 (50-102)||(52318217-52318269)
chr3 (50-197)||(36827355-36827502)
chr3 (52-103)||(47428485-47428536)
chr3 (52-103)||(48809557-48809608)
chr3 (52-102)||(48573156-48573206)
chr3 (52-98)||(49261055-49261101)
chr3 (52-102)||(55389371-55389421)
chr3 (53-102)||(17700690-17700739)
chr3 (50-103)||(20464259-20464312)
chr3 (50-107)||(45600859-45600916)
chr3 (50-103)||(47117972-47118024)
chr3 (50-102)||(36279123-36279175)
[»] chr6 (4 HSPs)
chr6 (52-106)||(6468733-6468787)
chr6 (50-103)||(31239867-31239920)
chr6 (58-103)||(10855991-10856036)
chr6 (49-134)||(30748149-30748234)
[»] scaffold0767 (1 HSPs)
scaffold0767 (50-102)||(6133-6185)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 9625464 - 9625287
Alignment:
Q  19 gaagagcaacacttcgttgaaacgagtttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagct 118  Q
    ||||||||||||||| |||  |||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||| |       
T  9625464 gaagagcaacacttcattgggacgagtttgaggatattgattttcgattcacgaactaaagtgaccattttctactttcactttaatctttacgataatc 9625365  T
Q  119 catactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtgataa 196  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9625364 catactccttgtcagcataaaacatttgtcacctaatcagttaacataattatttaacactaaagactaaagtgataa 9625287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 9625069 - 9624962
Alignment:
Q  195 aaccaagtgaattacactcactatgtttctttgtcactttatttatgaactcaattacaatatatattaatccaatgttttgtcaaaaaataaataaatt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9625069 aaccaagtgaattacactcactatgtttctttgtcactttatttatgaactcaattacaatatatattaattcaatgttttgtcaaaaaataaataaatt 9624970  T
Q  295 aaaccaat 302  Q
    ||||||||    
T  9624969 aaaccaat 9624962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 28526394 - 28526513
Alignment:
Q  19 gaagagcaacacttcgttgaaacgagtttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagct 118  Q
    |||||||||||||||||||| |||||||| || ||||||||||| |||||| |||| ||| ||||||||||||| |||||||||| ||  || |||| ||    
T  28526394 gaagagcaacacttcgttgagacgagtttgag-atattgattttcggttcaagaaccaaaatgatcattttctattttcactttagtcactatgacacct 28526492  T
Q  119 catactccttgtcagcataaa 139  Q
    |||| ||||||||| ||||||    
T  28526493 catattccttgtcaccataaa 28526513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 31075140 - 31075317
Alignment:
Q  19 gaagagcaacacttcgttgaaacgagtttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagct 118  Q
    ||||| ||| |||||||||  ||||||||  |||||||||||||  ||||| | || ||||||| || |||||||||||| |||| || ||  |||| ||    
T  31075140 gaagatcaatacttcgttgggacgagttttgggatattgattttcagttcagggaccaaagtgaccactttctactttca-tttagtccttgtgacacct 31075238  T
Q  119 catactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    | |||||||||||| |||||||| |||  ||| | ||||||||| |||||||||||||   |  |||||||||||||||    
T  31075239 cgtactccttgtcaccataaaacctttgtcacgtcatcagttaatataattatttaacgtcagtgactaaagtgataac 31075317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 31074211 - 31074090
Alignment:
Q  76 aaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaa 175  Q
    ||||||||||||||||| |||||||||| ||     |||| ||||||| |||||| |||||||||||||| |||| | ||||||||||| ||||||||||    
T  31074211 aaagtgatcattttctattttcactttagtccccgtgacacctcataccccttgttagcataaaacatttgccacatcatcagttaacaaaattatttaa 31074112  T
Q  176 cactaaggactaaagtgataac 197  Q
      | |  |||||||||||||||    
T  31074111 ttccagagactaaagtgataac 31074090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 24199205 - 24199078
Alignment:
Q  19 gaagagcaacacttcgttgaaacgagtttaaggatattgatttttgg-ttcacgaactaaagtgatcattttctactttcactttaatctttacgacagc 117  Q
    |||||||||||||||||||   || ||||  |||||||||||||| | |||| | || ||| |||||||||| ||||||||||||| | | |  |||| |    
T  24199205 gaagagcaacacttcgttggggcgggtttggggatattgatttttcgattcagggaccaaaatgatcattttttactttcactttagtatctgtgacacc 24199106  T
Q  118 tcatactccttgtcagcataaaacattt 145  Q
    |||||| |||||||||||||||||||||    
T  24199105 tcataccccttgtcagcataaaacattt 24199078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 45476445 - 45476569
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacc 151  Q
    |||||||||||||||||| | |||||||||| ||||||||||||| |||||  ||  || ||||  ||||||| ||||||||||||| ||||   ||||     
T  45476445 atattgatttttggttcagggactaaagtgaccattttctacttttactttggtccatatgacacatcatacttcttgtcagcataagacatgcgccaca 45476544  T
Q  152 taatcagttaacataattatttaac 176  Q
    | |||| |||||||| || ||||||    
T  45476545 tcatcacttaacatatttttttaac 45476569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 39138544 - 39138635
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaac 141  Q
    ||||||||||||| ||| || |||  ||||||| |||||||||||||||||||| || ||  |||| ||||||| | |||||||||||||||    
T  39138544 ggatattgattttcggtacaagaatcaaagtgaccattttctactttcactttagtccttgtgacacctcatacactttgtcagcataaaac 39138635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 28525001 - 28524875
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    ||||||||||||| |||||||| || ||| |||  ||||| ||||||||||||| ||  |  ||||  |||||||| |||||| |||||||  ||| |||    
T  28525001 ggatattgattttcggttcacggaccaaaatgacaattttttactttcactttagtccatctgacacttcatactctttgtcaacataaaatctttgcca 28524902  T
Q  150 cctaatcagttaacataattatttaac 176  Q
    | | ||||||||||| |||||||||||    
T  28524901 catcatcagttaacaaaattatttaac 28524875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 32898344 - 32898397
Alignment:
Q  49 aggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  32898344 aggatattgatttttggttcagggaccaaagtgaccattttctactttcacttt 32898397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 12637589 - 12637632
Alignment:
Q  19 gaagagcaacacttcgttgaaacgagtttaaggatattgatttt 62  Q
    ||||||||||||||||||| |||||||||| |||||||||||||    
T  12637589 gaagagcaacacttcgttggaacgagtttagggatattgatttt 12637632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 28005586 - 28005459
Alignment:
Q  51 gatattgatttttggttcacgaactaaagtgatca-ttttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    |||||| |||||||||||| | || |||||| | | |||| ||||||||||||| || ||| |||| || |||||| |||| || ||||||| ||| |||    
T  28005586 gatattaatttttggttcagggaccaaagtggtaaattttttactttcactttagtccttatgacaccttatactctttgttagtataaaacttttgcca 28005487  T
Q  150 cctaatcagttaacataattatttaaca 177  Q
    | | |||| || ||||||||||||||||    
T  28005486 catcatcaattcacataattatttaaca 28005459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 28062889 - 28062762
Alignment:
Q  51 gatattgatttttggttcacgaactaaagtgatca-ttttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    |||||| |||||||||||| | || |||||| | | |||| ||||||||||||| || ||| |||| || |||||| |||| || ||||||| ||| |||    
T  28062889 gatattaatttttggttcagggaccaaagtggtaaattttttactttcactttagtccttatgacaccttatactctttgttagtataaaacttttgcca 28062790  T
Q  150 cctaatcagttaacataattatttaaca 177  Q
    | | |||| || ||||||||||||||||    
T  28062789 catcatcaattcacataattatttaaca 28062762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 28619432 - 28619479
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttc 97  Q
    |||||||||||||||||||| | | |||||||||||||||||||||||    
T  28619432 ggatattgatttttggttcatggattaaagtgatcattttctactttc 28619479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 1952872 - 1952922
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  1952872 atattgatttttggttcagggaccaaagtgaccattttctactttcacttt 1952922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 41121348 - 41121295
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| | || |||||||  |||||||||||||||||||    
T  41121348 ggatattgatttttggttcaaggaccaaagtgacaattttctactttcacttta 41121295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 33315085 - 33314974
Alignment:
Q  66 ttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacat 165  Q
    |||||| || |||||||  ||||||||||||||||||  ||  |  |||| ||||||||||||||||||| ||||||| |  ||| | |||| ||||||     
T  33315085 ttcacggaccaaagtgactattttctactttcactttggtccatgtgacacctcatactccttgtcagcaaaaaacatgtgtcacttcatcacttaacag 33314986  T
Q  166 aattatttaaca 177  Q
    |||| |||||||    
T  33314985 aattttttaaca 33314974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 45476403 - 45476312
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacat 143  Q
    |||||||||||||||||| | || |||||||  ||||||||||||||||||  ||| |  |||| ||| || |||| |||||||||| ||||    
T  45476403 atattgatttttggttcagggaccaaagtgacaattttctactttcactttggtctctgtgacacctcttaatcctcgtcagcataacacat 45476312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 10407486 - 10407536
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||||||||||   |||||||| | |||||||||||||||||||    
T  10407486 atattgatttttggttcagagactaaagtaaccattttctactttcacttt 10407536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 35178707 - 35178757
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| |  | ||||||||||||||||| |||||||||    
T  35178707 atattgatttttggttcaggggccaaagtgatcattttctagtttcacttt 35178757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 160
Target Start/End: Original strand, 12637634 - 12637751
Alignment:
Q  43 agtttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaaca 142  Q
    |||||| || || |||||||  ||||| | || ||||||||||| |||||||||||||||| ||  |  ||||  ||||||||||||| || |||||||     
T  12637634 agtttagggttaatgattttcagttcagggaccaaagtgatcatattctactttcactttagtccatgtgacacatcatactccttgttagtataaaacc 12637733  T
Q  143 ttttccacctaatcagtt 160  Q
    ||| |||| | |||||||    
T  12637734 tttgccacatcatcagtt 12637751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 28006426 - 28006475
Alignment:
Q  16 gaagaagagcaacacttcgttgaaacgagtttaaggatattgatttttgg 65  Q
    ||||||||||||| |||| |||  |||||||| |||||||||||||||||    
T  28006426 gaagaagagcaactcttcattgggacgagtttgaggatattgatttttgg 28006475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 28063729 - 28063778
Alignment:
Q  16 gaagaagagcaacacttcgttgaaacgagtttaaggatattgatttttgg 65  Q
    ||||||||||||| |||| |||  |||||||| |||||||||||||||||    
T  28063729 gaagaagagcaactcttcattgggacgagtttgaggatattgatttttgg 28063778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 28525070 - 28525025
Alignment:
Q  17 aagaagagcaacacttcgttgaaacgagtttaaggatattgatttt 62  Q
    |||||||||||||||||||||  ||||||||  |||||||||||||    
T  28525070 aagaagagcaacacttcgttgggacgagtttggggatattgatttt 28525025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 41754212 - 41754127
Alignment:
Q  49 aggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagc 134  Q
    |||||||||||||| | |||| | || |||||||  ||||| ||||||||||||| ||  || ||||  |||||||||||||||||    
T  41754212 aggatattgattttcgattcagggaccaaagtgactattttttactttcactttagtccctatgacacgtcatactccttgtcagc 41754127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 41754687 - 41754768
Alignment:
Q  51 gatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtca 132  Q
    |||||||||||| | |||| | || ||||||| |||||| ||||||||||||||||  |  ||||  |||||||||||||||    
T  41754687 gatattgattttcgattcatggaccaaagtgaccattttttactttcactttaatccctgtgacacatcatactccttgtca 41754768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 2552259 - 2552203
Alignment:
Q  47 taaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||| ||||||||||| ||||||  ||| |||||||  |||||||||||||||||||    
T  2552259 taagaatattgattttcggttcagaaaccaaagtgacaattttctactttcacttta 2552203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 35177617 - 35177565
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||| |||||||||||||| | || ||||| | |||||||||||||||||||    
T  35177617 ggatactgatttttggttcagggaccaaagtaaccattttctactttcacttt 35177565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 14887344 - 14887521
Alignment:
Q  16 gaagaagagcaacacttcgttgaaacgagtttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgaca 115  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||||  |||| | || | | ||| |||||||||||||||||||| ||  |  ||||    
T  14887344 gaagaagagcaacacttcgttgggacgagtttgaggatattgatttttaattcagggaccatattgaccattttctactttcactttagtccctgtgaca 14887443  T
Q  116 gctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtga 193  Q
     |||||||||||||| ||||||||||||||  ||| | ||||||||||| ||||||||||| |||  || ||||||||    
T  14887444 cctcatactccttgttagcataaaacatttgtcacatcatcagttaacaaaattatttaacgctagagattaaagtga 14887521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 26585348 - 26585174
Alignment:
Q  20 aagagcaacacttcgttgaaacgagtttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctc 119  Q
    |||||||||||||||||| || ||||||||||||||| ||||| |||||| | || ||||||| || |||||| |||||||||| ||  |  |||| |||    
T  26585348 aagagcaacacttcgttggaatgagtttaaggatatttattttcggttcagggaccaaagtgacca-tttctattttcactttagtccctgtgacacctc 26585250  T
Q  120 atactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    ||||||||||||| ||||||| || |  ||| | |||| |||||||||||||||||| |||  |||||||||||||||    
T  26585249 atactccttgtcaacataaaatatgt--cacatcatcaattaacataattatttaacgctagagactaaagtgataac 26585174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 34037552 - 34037679
Alignment:
Q  49 aggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcc 148  Q
    ||||||||||||||||||||| |||  |||||||  |||||||||| |||||||| ||| |  |||| ||||||||||||||||||||||||||| |  |    
T  34037552 aggatattgatttttggttcaggaatcaaagtgactattttctactgtcactttagtctgtgtgacacctcatactccttgtcagcataaaacatgtgtc 34037651  T
Q  149 acctaatcagttaacataattatttaac 176  Q
    || | |||| ||||||||||| ||||||    
T  34037652 acatcatcacttaacataattttttaac 34037679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 18676672 - 18676829
Alignment:
Q  19 gaagagcaacacttcgttgaaacgagtttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagct 118  Q
    |||||| ||||||||||||| |||| |||   ||||||||||||| ||||| | || ||||||| |||||||||||||| ||||| ||| |  ||||  |    
T  18676672 gaagagtaacacttcgttgagacgactttggagatattgattttttgttcagggaccaaagtgaccattttctactttcgctttagtctctttgacattt 18676771  T
Q  119 catactccttgtcagcataaaacattttccacctaatcagttaacataattatttaac 176  Q
    ||||||||||||| ||||||||   || |||| | |||||||||||| ||||||||||    
T  18676772 catactccttgtcggcataaaatcattaccacgtcatcagttaacatcattatttaac 18676829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 37607346 - 37607198
Alignment:
Q  49 aggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcc 148  Q
    |||||||||||||||||||||   || |||||||  ||||||||| ||||||||| || ||  |||| |||||||| ||||| |||||||||| |||  |    
T  37607346 aggatattgatttttggttcagagaccaaagtgactattttctacgttcactttagtccttgtgacatctcatacttcttgttagcataaaacctttgtc 37607247  T
Q  149 acctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    || | |||||||||||||||||| ||||   | ||||||||||||||||    
T  37607246 acgtcatcagttaacataattatataacgtcagggactaaagtgataac 37607198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 12746111 - 12746228
Alignment:
Q  80 tgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacact 179  Q
    |||||||||||||||||||||||| ||  |  |||| ||||||||| ||||||||||||||| |||  ||| |||||| |||  | |||||||||||| |    
T  12746111 tgatcattttctactttcactttagtccctgtgacacctcatactctttgtcagcataaaacttttgtcacataatcacttactagaattatttaacatt 12746210  T
Q  180 aaggactaaagtgataac 197  Q
    | ||||||||||||||||    
T  12746211 atggactaaagtgataac 12746228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 15441920 - 15441997
Alignment:
Q  119 catactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtgataa 196  Q
    ||||||| ||||||||||||||||||| |||| | ||||||||||| |||||||||||||||  ||||||||||||||    
T  15441920 catactctttgtcagcataaaacatttgccacatcatcagttaacaaaattatttaacactagagactaaagtgataa 15441997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 34582550 - 34582697
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    ||||||||||||||  |||| | |||||||||  ||||||||||||| |||||| |   |  |||| |||||||  |||||||||||||||| ||| |||    
T  34582550 ggatattgattttttattcagggactaaagtggacattttctacttttactttagttcatgtgacacctcatacctcttgtcagcataaaacctttgcca 34582649  T
Q  150 cctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    | | ||||||| | |||||||||||||   | ||||||||||||||||    
T  34582650 catgatcagttgatataattatttaacgtcagggactaaagtgataac 34582697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 40000237 - 40000287
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || |||||||||||||||||||||||||||    
T  40000237 atattgatttttggttcaaggaccaaagtgatcattttctactttcacttt 40000287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 31442579 - 31442474
Alignment:
Q  45 tttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacatt 144  Q
    |||| ||||||||||||| |||||| | || || ||| |||||||  |||||||||||| || ||| |||| ||||| | | ||||||||| ||||||||    
T  31442579 tttagggatattgattttcggttcagggaccaatgtgttcatttttgactttcactttagtccttatgacacctcatgcactttgtcagcacaaaacatt 31442480  T
Q  145 ttccac 150  Q
    ||||||    
T  31442479 ttccac 31442474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 43380810 - 43380757
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| | || ||||||| ||||||||||||||||||||    
T  43380810 ggatattgatttttggttcagggaccaaagtgaccattttctactttcacttta 43380757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 21733653 - 21733777
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacc 151  Q
    ||||||||||| ||||||   || ||||||| |||||| ||||||||||||| || |   ||||  |||||||||||||||||||||||||| |  |||     
T  21733653 atattgattttcggttcagagaccaaagtgaccattttttactttcactttagtcatcgtgacacttcatactccttgtcagcataaaacatgtgtcaca 21733752  T
Q  152 taatcagttaacataattatttaac 176  Q
    | |||| |||||| |||| ||||||    
T  21733753 tcatcacttaacagaattttttaac 21733777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 33162011 - 33161939
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcata 122  Q
    |||||| ||||||||||||| | ||||||||||| |||||||||||||| |||| |||||  |||| ||||||    
T  33162011 ggatatcgatttttggttcagggactaaagtgatgattttctactttcattttagtctttgtgacacctcata 33161939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 14886724 - 14886610
Alignment:
Q  26 aacacttcgttgaaacgagtttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactc 125  Q
    |||||||||||||||| |||||  |||||||||||||  ||||| | || |||| ||  ||||| |||||||| |||| ||  || |||  |||||||||    
T  14886724 aacacttcgttgaaacaagtttggggatattgattttctgttcaaggaccaaagcgacaattttgtactttcattttagtccctatgacgcctcatactc 14886625  T
Q  126 cttgtcagcataaaa 140  Q
     ||||||||||||||    
T  14886624 tttgtcagcataaaa 14886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 18675326 - 18675181
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    ||||||| ||||||| |||| | |  |||||||  |||||||||||| |||||| || |   |||| ||||||||  || ||||||||||||||||  ||    
T  18675326 ggatattaatttttgattcaaggatcaaagtgacaattttctactttgactttagtcctgt-gacacctcatactttttatcagcataaaacatttgtca 18675228  T
Q  150 cctaatcagttaacataattatttaacactaaggactaaagtgataa 196  Q
    | | ||||||||||| |||||||| || | || ||||||||||||||    
T  18675227 cattatcagttaacaaaattatttgacgccaaagactaaagtgataa 18675181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 21732338 - 21732285
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||||| |||||||||||| | || ||||||| ||||||||||||||||||||    
T  21732338 ggatattaatttttggttcagggaccaaagtgaccattttctactttcacttta 21732285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 32765160 - 32765107
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| | || |||| || ||||||||||||||||||||    
T  32765160 ggatattgatttttggttcagggaccaaagcgaccattttctactttcacttta 32765107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 2910323 - 2910275
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttca 98  Q
    |||||||||||||||||||| | || ||||||||||||||| |||||||    
T  2910323 ggatattgatttttggttcatggaccaaagtgatcattttcgactttca 2910275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 14704228 - 14704176
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||||| | || |||||||  ||||||||||||||||||    
T  14704228 ggatattgatttttggttcatggaccaaagtgactattttctactttcacttt 14704176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 26586210 - 26586322
Alignment:
Q  85 attttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaagga 184  Q
    ||||||||||||||||||| ||| |||| || ||||||||| ||||||||| ||| | |||  ||  | || |  ||||||||||||||||| | |  ||    
T  26586210 attttctactttcactttagtctctacggcacctcatactctttgtcagcacaaatcctttatcatgtcataaactaacataattatttaacgccagaga 26586309  T
Q  185 ctaaagtgataac 197  Q
    |||||||||||||    
T  26586310 ctaaagtgataac 26586322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 38853936 - 38853872
Alignment:
Q  112 gacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaac 176  Q
    |||| |||||||||||||| |||||||||| |||  ||| | || ||||||||||||||||||||    
T  38853936 gacacctcatactccttgttagcataaaacttttgtcacgtcatgagttaacataattatttaac 38853872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 17466283 - 17466228
Alignment:
Q  51 gatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatc 106  Q
    |||||| |||||| ||| | |||| ||||||||||||||||||||| |||||||||    
T  17466283 gatattaatttttagtttaggaaccaaagtgatcattttctacttttactttaatc 17466228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 17330114 - 17330172
Alignment:
Q  45 tttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||| ||||||||||||| |||||| | || ||||||| |||||| |||||||||||||    
T  17330114 tttagggatattgattttgggttcagggaccaaagtgaccattttttactttcacttta 17330172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 24459356 - 24459406
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | |  ||||||| |||||||||||||||||||    
T  24459356 atattgatttttggttcagggatcaaagtgaccattttctactttcacttt 24459406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 31091429 - 31091479
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||||||||||   || ||||||| |||||||||||||||||||    
T  31091429 atattgatttttggttcaaagaccaaagtgaccattttctactttcacttt 31091479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 34582482 - 34582532
Alignment:
Q  19 gaagagcaacacttcgttgaaacgagtttaaggatattgatttttggttca 69  Q
    |||||||||||||| |||| || |||||| ||||||||||||| |||||||    
T  34582482 gaagagcaacactttgttggaatgagtttgaggatattgatttatggttca 34582532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 39015226 - 39015176
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||| ||| |||||||||||||||||||    
T  39015226 atattgatttttggttcaaggaccaaactgaccattttctactttcacttt 39015176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 39016285 - 39016335
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || |||||||  ||||||||||||||||||    
T  39016285 atattgatttttggttcagggaccaaagtgacaattttctactttcacttt 39016335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 5914912 - 5914965
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| | ||||||||||  ||||| |||||||| ||||    
T  5914912 ggatattgatttttggttcagggactaaagtgacaattttttactttcatttta 5914965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 12010282 - 12010229
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||||||||||||||||||   || ||| ||| ||||||||||||||||||||    
T  12010282 ggatattgatttttggttcatataccaaaatgaccattttctactttcacttta 12010229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 24458284 - 24458231
Alignment:
Q  49 aggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||| || | | || ||||||| |||||||||||||||||||    
T  24458284 aggatattgatttttgattgagggaccaaagtgaccattttctactttcacttt 24458231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 31443126 - 31443178
Alignment:
Q  51 gatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||| |||||| |||| ||| |||  |||||||||||||||||||    
T  31443126 gatattgattttcggttcaggaaccaaaatgacaattttctactttcacttta 31443178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 25621567 - 25621748
Alignment:
Q  19 gaagagcaacacttcgttgaaacgagtttaaggatattgatttttggttcacgaacta---aagtgatcattttctactttcactttaatctttacgaca 115  Q
    |||||||||||||||||||| |||||||| ||||||||| |||| |||||| ||||||   |||||| |||||||||||||||||||| || ||   |||    
T  25621567 gaagagcaacacttcgttgagacgagtttgaggatattggttttcggttcaggaactaattaagtgaccattttctactttcactttagtccttgttaca 25621666  T
Q  116 gctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
      |||||| |||||| |||||||||  ||| |||  | ||||||||||| |||||||||||   |  |||||||||||||||    
T  25621667 cttcataccccttgtgagcataaaatctttgccaaatcatcagttaacaaaattatttaacgtcagtgactaaagtgataac 25621748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 24287723 - 24287576
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    ||||||| |||||||||||| | ||||||| || |||||||||||||||||||| ||  |  |||| ||||||||||||||| ||||||    ||| ||     
T  24287723 ggatattcatttttggttcagggactaaagcgaccattttctactttcactttagtccctgtgacacctcatactccttgtcggcataatttttttgcct 24287624  T
Q  150 cctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    | | |||| ||||||||||||||||||   ||||||||||||||||||    
T  24287623 cattatcaattaacataattatttaacgtcaaggactaaagtgataac 24287576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 8879461 - 8879570
Alignment:
Q  88 ttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggacta 187  Q
    |||||||||||||||| ||| || |||| |||||| ||||||||| |||||||| ||| ||| || || |||||||| |||||||||||   | ||||||    
T  8879461 ttctactttcactttactctatatgacacctcatattccttgtcatcataaaacctttgccatctcattagttaacaaaattatttaacgtcagggacta 8879560  T
Q  188 aagtgataac 197  Q
    ||||||||||    
T  8879561 aagtgataac 8879570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 8870222 - 8870126
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctc--atactccttgtcagcataaaacatt 144  Q
    |||||| ||||||| ||||| | || ||||| ||||||||||||||||| |||| |||||  |||| |||  |||||||||||||||||||||||||    
T  8870222 ggatatcgatttttagttcagggaccaaagtaatcattttctactttcattttagtctttgtgacacctcatatactccttgtcagcataaaacatt 8870126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 8375498 - 8375556
Alignment:
Q  45 tttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||| |||||||||||||||||| | | |||||||||| ||||||||||||||||||||    
T  8375498 tttagggatattgatttttggtttagggactaaagtgaccattttctactttcacttta 8375556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 8870907 - 8871056
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctc--atactccttgtcagcataaaacattttc 147  Q
    |||||| ||||||| ||||| | || ||||| | ||||||||||||||| |||| | |||  |||| | |  |||||||||||||||||||||||||| |    
T  8870907 ggatatcgatttttagttcagggaccaaagtaaccattttctactttcattttagtttttgtgacaccacatatactccttgtcagcataaaacatttgc 8871006  T
Q  148 cacctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    ||| | || |||||||| ||| |||||| |  |  |||||||||||||||    
T  8871007 cacatcattagttaacaaaataatttaatatcagagactaaagtgataac 8871056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 22621366 - 22621256
Alignment:
Q  54 attgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccaccta 153  Q
    |||||||||||||| |   || |||||||||||||||||||||||||||| || ||  ||||  |||| | ||||||||||| |||||||||  || ||     
T  22621366 attgatttttggtttagataccaaagtgatcattttctactttcactttagtccttgtgacacatcatgcgccttgtcagcaaaaaacatttgtcaactc 22621267  T
Q  154 atcagttaaca 164  Q
    |||||||||||    
T  22621266 atcagttaaca 22621256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 2677164 - 2677106
Alignment:
Q  45 tttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||| |||||||||||||| ||||| | |  ||||||||||||||||||||||||||||    
T  2677164 tttagggatattgatttttagttcagggaacaaagtgatcattttctactttcacttta 2677106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 7258496 - 7258446
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  7258496 atattgatttttggttcagggaccaaagtgaccattttctactttcacttt 7258446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 48647345 - 48647395
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  48647345 atattgatttttggttcagggacgaaagtgaccattttctactttcacttt 48647395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 48788574 - 48788624
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  48788574 atattgatttttggttcagggaccaaagtgaccattttctactttcacttt 48788624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 32793419 - 32793266
Alignment:
Q  45 tttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacatt 144  Q
    |||| ||||||| ||||||| |||| | || ||| |||||||||| ||||||||||||| ||  |  |||| |||| |   | |||||   |||||| |     
T  32793419 tttagggatattcatttttgattcagggaccaaaatgatcattttttactttcactttagtccatgtgacacctcacatgtcatgtcattgtaaaacgtg 32793320  T
Q  145 ttccacctaatcagttaacataattatttaacactaaggactaaagtgataacc 198  Q
    | |||| | ||||||||||||||||||||||| | || ||||||||||||||||    
T  32793319 tgccacatcatcagttaacataattatttaacgccaaagactaaagtgataacc 32793266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 385529 - 385585
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatc 106  Q
    ||||||||| ||| |||||| | |||||||||| |||||||||||| ||||||||||    
T  385529 ggatattgactttcggttcagggactaaagtgaccattttctacttgcactttaatc 385585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 42478170 - 42478222
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||| ||||| | || ||||||| |||||||||||||||||||    
T  42478170 ggatattgattttttgttcatggaccaaagtgaccattttctactttcacttt 42478222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 44334350 - 44334402
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||||| | || |||||||  ||||||||||||||||||    
T  44334350 ggatattgatttttggttcatggaccaaagtgactattttctactttcacttt 44334402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 42477594 - 42477551
Alignment:
Q  59 tttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||| | || |||||||||||||||||||||||||||    
T  42477594 tttttggttcagggaccaaagtgatcattttctactttcacttt 42477551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 44333358 - 44333311
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcac 99  Q
    |||||||||||||||||| | || ||||||| ||||||||||||||||    
T  44333358 atattgatttttggttcagggaccaaagtgaccattttctactttcac 44333311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 8375122 - 8375076
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctacttt 96  Q
    ||||||||||||||||||||   |||| |||||||||||||||||||    
T  8375122 ggatattgatttttggttcatagactagagtgatcattttctacttt 8375076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 10894560 - 10894514
Alignment:
Q  56 tgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||| || | |||||||||| |||||||||||||||||||    
T  10894560 tgatttttggtccagggactaaagtgaccattttctactttcacttt 10894514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 10898975 - 10899025
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| |||||||||||||| ||||    
T  10898975 atattgatttttggttcaaggaccaaagtgaccattttctactttctcttt 10899025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 24288814 - 24288892
Alignment:
Q  118 tcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtgataa 196  Q
    |||||||||||||||||||||||| |||  ||| | ||||||||||| |||||| |||| | |  || |||||||||||    
T  24288814 tcatactccttgtcagcataaaacctttgtcacatcatcagttaacagaattatataacgccagagaataaagtgataa 24288892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 35728988 - 35729038
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| || ||||||||||||||||    
T  35728988 atattgatttttggttcagggaccaaagtgaccactttctactttcacttt 35729038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 39824348 - 39824258
Alignment:
Q  74 ctaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaaca 164  Q
    ||||||||| |||||||||||||||||||| ||  |  ||||  |||| | ||||||||||| ||||||||| |  ||| |||||||||||    
T  39824348 ctaaagtgaccattttctactttcactttagtccctgtgacacttcatgcaccttgtcagcacaaaacatttgcatcctcatcagttaaca 39824258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 6680413 - 6680466
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||| | | |||||| |||  |||||||||||||||||||    
T  6680413 ggatattgatttttggtttagggactaaaatgactattttctactttcacttta 6680466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 8048664 - 8048717
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||||| ||||| |||||| | || ||||||| ||||||||||||||||||||    
T  8048664 ggatattaattttcggttcagggaccaaagtgaccattttctactttcacttta 8048717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 43461617 - 43461670
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| | |  ||||||| |||||| |||||||||||||    
T  43461617 ggatattgatttttggttcagggatcaaagtgaccattttttactttcacttta 43461670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 27067996 - 27067900
Alignment:
Q  79 gtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaa 175  Q
    |||| |||||||||||||||||||| ||| |  ||||   ||||||| ||||||||||||| |||||  ||| | | | |||| |||||||||||||    
T  27067996 gtgaccattttctactttcactttagtctctgtgacacaccatactctttgtcagcataaaccatttgtcacatcacccgttagcataattatttaa 27067900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 27210317 - 27210413
Alignment:
Q  79 gtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaa 175  Q
    |||| |||||||||||||||||||| ||| |  ||||   ||||||| ||||||||||||| |||||  ||| | | | |||| |||||||||||||    
T  27210317 gtgaccattttctactttcactttagtctctgtgacacaccatactctttgtcagcataaaccatttgtcacatcacccgttagcataattatttaa 27210413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 30924909 - 30924961
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||||||||||||   |  ||||||| |||||||||||||||||||    
T  30924909 ggatattgatttttggttcatagatcaaagtgaccattttctactttcacttt 30924961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 8975402 - 8975255
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    ||||||||||||||||||   | || ||||||| |||||||||||||||||||| ||  |  |||| ||||||||||||||| |||||||||||||  ||    
T  8975402 ggatattgatttttggtttcgggaccaaagtgaccattttctactttcactttagtccctgtgacatctcatactccttgtcggcataaaacatttgtca 8975303  T
Q  150 cctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
      | |||| |||||| ||||||||||| | || |||||||||||||||    
T  8975302 tatcatcaattaacaaaattatttaacgccaaagactaaagtgataac 8975255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 29766166 - 29766019
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    |||||||||||||| ||||| | || |||||||  |||||||| |||||||||| |   || |||| ||||||||  |||||||||||||||||||   |    
T  29766166 ggatattgattttttgttcagggaccaaagtgacaattttctattttcactttagtaactatgacacctcatactatttgtcagcataaaacatttgtta 29766067  T
Q  150 cctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    | | |||| |||||| |||||||||||||||  |||||||||||||||    
T  29766066 catcatcaattaacaaaattatttaacactatagactaaagtgataac 29766019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 50107083 - 50107230
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    ||||||| ||||| |||| | | || ||||||| ||| | |||||||||| ||| ||  |  |||| ||||||||||||||||||||||||| |||  ||    
T  50107083 ggatattaattttcggttaaaggaccaaagtgaccatgtcctactttcacgttagtccatgtgacacctcatactccttgtcagcataaaacctttgtca 50107182  T
Q  150 cctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
      | ||||||||||||||||||||||| | ||||||||||||||||||    
T  50107183 tgtcatcagttaacataattatttaacgccaaggactaaagtgataac 50107230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 22856922 - 22856797
Alignment:
Q  49 aggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcc 148  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |  |||| ||||||  || ||||| | |||||  | |  |    
T  22856922 aggatattgaattttggttcaggaactaaagtgatcattttctactttcactttagtctgt--gacacctcatatgccatgtcatcgtaaaatttgtgtc 22856825  T
Q  149 acctaatcagttaacataattatttaac 176  Q
    || |||||| ||||||||||||||||||    
T  22856824 acataatcacttaacataattatttaac 22856797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 11060665 - 11060811
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    |||||||||||||  ||||| | |  |||||||  ||||||||||||||||||| || ||  || | ||||||| ||||||||| ||||||| |||||||    
T  11060665 ggatattgattttctgttcagggatcaaagtgacaattttctactttcactttagtcattgtga-acctcataccccttgtcagaataaaaccttttcca 11060763  T
Q  150 cctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    | | ||||||||||| |||||||||||     ||||||||||||||||    
T  11060764 cgtcatcagttaacagaattatttaacgtcggggactaaagtgataac 11060811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 44720697 - 44720780
Alignment:
Q  20 aagagcaacacttcgttgaaacgagtttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||| |||||||| |||| |||||||||   |||||||||||| |||||| |||| |||||||  |||||||||||||||||||    
T  44720697 aagaacaacactttgttggaacgagtttggagatattgattttcggttcaagaaccaaagtgacaattttctactttcacttta 44720780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 6612653 - 6612567
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcat 136  Q
    |||||||||||||||||||| | || ||||||||||||||||||||| | |||| ||  |  |||| |||||| |||||||||||||    
T  6612653 ggatattgatttttggttcaaggacaaaagtgatcattttctactttgaatttagtccctgtgacacctcatattccttgtcagcat 6612567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 25038129 - 25038071
Alignment:
Q  45 tttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||| |||||||||||||||||||| | || |||||||| |||||||||||||||||||    
T  25038129 tttagggatattgatttttggttcagggaccaaagtgataattttctactttcacttta 25038071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 25043341 - 25043283
Alignment:
Q  45 tttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||| |||||||||||||||||||| | || |||||||| |||||||||||||||||||    
T  25043341 tttagggatattgatttttggttcagggaccaaagtgataattttctactttcacttta 25043283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 3117892 - 3117839
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||||| |||||||||||| | |||||| ||||||||||||||||||||||||    
T  3117892 ggatattaatttttggttcaaggactaaaatgatcattttctactttcacttta 3117839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 33342597 - 33342512
Alignment:
Q  112 gacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    |||| ||||||||||||||||||||||||| |||  ||| | |||| ||||||||||||||||||   |  |||||||||||||||    
T  33342597 gacacctcatactccttgtcagcataaaacttttgtcacatcatcacttaacataattatttaacgtcagagactaaagtgataac 33342512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 16249891 - 16249833
Alignment:
Q  45 tttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||| ||||||||||||| |||||| | |||||| ||| ||||||||||||||||||||    
T  16249891 tttagggatattgattttcggttcagggactaaaatgaccattttctactttcacttta 16249833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 39725582 - 39725468
Alignment:
Q  51 gatattgattttt-ggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    ||||||||||||| |||| | | ||| |||||||||||||||||||||| |||| ||  | ||||| || || | ||||||||||| ||||||||| |||    
T  39725582 gatattgattttttggttaagggactgaagtgatcattttctactttcattttagtcccttcgacaccttattcaccttgtcagcacaaaacatttgcca 39725483  T
Q  150 cctaatcagttaaca 164  Q
    | | |||||| ||||    
T  39725482 catcatcagtcaaca 39725468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 11059910 - 11059869
Alignment:
Q  20 aagagcaacacttcgttgaaacgagtttaaggatattgattt 61  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  11059910 aagagcaacacttcgttgagacaagtttaaggatattgattt 11059869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 34085765 - 34085712
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| | |  ||||||||||||||||||||||| ||||    
T  34085765 ggatattgatttttggttcaagcatcaaagtgatcattttctactttcatttta 34085712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 51450243 - 51450190
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||||| |||||||||||| | |||| ||||||||||||||||||||| ||||    
T  51450243 ggatatttatttttggttcatggactatagtgatcattttctactttcagttta 51450190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 7944378 - 7944326
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||||||||| || | || |||||||| ||||||||||||||||||    
T  7944378 ggatattgatttttggtccagggaccaaagtgataattttctactttcacttt 7944326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 9339869 - 9339817
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||||||||||||   || ||||||| |||||||||||||||||||    
T  9339869 ggatattgatttttggttcagagaccaaagtgaccattttctactttcacttt 9339817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 1407873 - 1407818
Alignment:
Q  48 aaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||||||| ||||| |||||| | || |||||||| |||||||||||||||||||    
T  1407873 aaggatattaattttcggttcaaggaccaaagtgataattttctactttcacttta 1407818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 7945456 - 7945506
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||| | | || ||||||| |||||||||||||||||||    
T  7945456 atattgatttttggtttagggaccaaagtgaccattttctactttcacttt 7945506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 9340927 - 9340977
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||| |||||||||| | || ||||||| |||||||||||||||||||    
T  9340927 atattgaattttggttcagggaccaaagtgaccattttctactttcacttt 9340977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 11830133 - 11830076
Alignment:
Q  49 aggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatc 106  Q
    ||||||||||||||||||||  | |  ||| ||| |||||||||||||||||||||||    
T  11830133 aggatattgatttttggttctaggatcaaaatgaccattttctactttcactttaatc 11830076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 32665669 - 32665722
Alignment:
Q  50 ggatattgatttttg-gttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||||||| ||||| | || ||||||| |||||||||||||||||||    
T  32665669 ggatattgatttttgtgttcagggaccaaagtgaccattttctactttcacttt 32665722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 39726568 - 39726680
Alignment:
Q  51 gatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccac 150  Q
    ||||||||||||||||||| |  ||||| |||  ||||||||||||||||||| ||| || || | ||| ||| ||||||||||  |||||| ||  |||    
T  39726568 gatattgatttttggttcaggg-ctaaaatgactattttctactttcactttagtctatatgatacctcgtacaccttgtcagctcaaaacacttgtcac 39726666  T
Q  151 ctaatcagttaaca 164  Q
    || |||| ||||||    
T  39726667 ctcatcaattaaca 39726680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 52439685 - 52439632
Alignment:
Q  49 aggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||||||||||| | | |  ||||||| |||||||||||||||||||    
T  52439685 aggatattgatttttggtttagggatcaaagtgaccattttctactttcacttt 52439632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 1001869 - 1001929
Alignment:
Q  137 aaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    |||||||||||||||| ||||||||||| |||| ||||||  ||  ||||||| |||||||    
T  1001869 aaaacattttccacctcatcagttaacaaaattttttaacgttagagactaaactgataac 1001929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 35538189 - 35538328
Alignment:
Q  58 atttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatca 157  Q
    ||||| ||||||  ||| |||||||| ||||||||||||||||||| |||||  |||| ||||||||| || | |||||||||  |||  | | | ||||    
T  35538189 attttcggttcagaaacgaaagtgataattttctactttcactttagtctttgtgacacctcatactctttcttagcataaaatgtttgtcgcatcatca 35538288  T
Q  158 gttaacataattatttaacactaaggactaaagtgataac 197  Q
    ||||||| |||||||||||| |||||| ||||||||||||    
T  35538289 gttaacagaattatttaacattaaggattaaagtgataac 35538328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 32555430 - 32555552
Alignment:
Q  53 tattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacct 152  Q
    |||||||||| |||||| |||| || ||||  ||||||||||||||||||| ||  |  |||| ||||||||||||||||||||||||| |||  ||  |    
T  32555430 tattgattttcggttcaggaaccaa-gtgacaattttctactttcactttagtccatgtgacacctcatactccttgtcagcataaaacctttgtcatat 32555528  T
Q  153 aatcagttaacataattatttaac 176  Q
     |||| ||||||||||||||||||    
T  32555529 catcaattaacataattatttaac 32555552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 16611931 - 16611872
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatcttt 109  Q
    |||||||||||||||||||| | | ||||||||||||||||||| ||||||||| |||||    
T  16611931 ggatattgatttttggttcagggattaaagtgatcattttctacattcactttagtcttt 16611872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 34173503 - 34173386
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    ||||||||||||||||||||   || ||||||||||||||||||||||| |||| ||  |  || | || || | ||||||||||| |||||||||  ||    
T  34173503 ggatattgatttttggttcagagaccaaagtgatcattttctactttcagtttagtccctgtgataccttatgcaccttgtcagcacaaaacatttgtca 34173404  T
Q  150 cctaatcagttaacataa 167  Q
    ||| |||||||| |||||    
T  34173403 cctcatcagttagcataa 34173386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 2464892 - 2464840
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  2464892 ggatattgatttttggttcagggaccaaagtgaccattttctactttcacttt 2464840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 4593081 - 4593031
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  4593081 atattgatttttggttcagggaccaaagtgaccattttctactttcacttt 4593031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 8074671 - 8074621
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  8074671 atattgatttttggttcagggaccaaagtgaccattttctactttcacttt 8074621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 8075735 - 8075785
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||||||||||| |||||||||||    
T  8075735 atattgatttttggttcagggaccaaagtgatcattttcgactttcacttt 8075785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 32640509 - 32640459
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  32640509 atattgatttttggttcaaggaccaaagtgaccattttctactttcacttt 32640459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 13651041 - 13651094
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||||||||||| |||||| | |||||||||| |||||| |||||||||||||    
T  13651041 ggatattgattttcggttcagggactaaagtgaccattttttactttcacttta 13651094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 21069498 - 21069406
Alignment:
Q  84 cattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaac 176  Q
    |||||||||||||||||||||||  || ||||  ||||||||||||||| |||||  ||| | |||| | |||| |||||| |||| ||||||    
T  21069498 cattttctactttcactttaatccatatgacacgtcatactccttgtcaacataagtcatgtgccacatcatcacttaacaaaattttttaac 21069406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 545938 - 545988
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || |||||||  ||||||||||||||||||    
T  545938 atattgatttttggttcaaggaccaaagtgactattttctactttcacttt 545988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 14889990 - 14889940
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| ||||||||||||| |||||    
T  14889990 atattgatttttggttcagggaccaaagtgaccattttctacttttacttt 14889940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 14891049 - 14891099
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||||| |||| | |||||||||| ||||||||||| |||||||    
T  14891049 atattgatttttgattcagggactaaagtgaccattttctactatcacttt 14891099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 25590651 - 25590601
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||||||||||   || ||||||| |||||||||||||||||||    
T  25590651 atattgatttttggttcagagaccaaagtgaccattttctactttcacttt 25590601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 28589920 - 28589870
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| ||||||||||||| |||||    
T  28589920 atattgatttttggttcagggaccaaagtgaccattttctacttttacttt 28589870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 28865116 - 28865158
Alignment:
Q  20 aagagcaacacttcgttgaaacgagtttaaggatattgatttt 62  Q
    ||||||||||||||||||| |||||||| |||||||| |||||    
T  28865116 aagagcaacacttcgttgagacgagtttgaggatattaatttt 28865158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 40611481 - 40611431
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | ||  |||||| |||||||||||||||||||    
T  40611481 atattgatttttggttcagggacccaagtgaccattttctactttcacttt 40611431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 40612561 - 40612611
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||| | |||||||||||||||||||    
T  40612561 atattgatttttggttcagggaccaaagtaaccattttctactttcacttt 40612611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 30970543 - 30970612
Alignment:
Q  128 tgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    ||||||||||||||||||  ||| | ||| ||||||| ||||||||||   || ||||||||||||||||    
T  30970543 tgtcagcataaaacatttgtcacgtcatcggttaacagaattatttaatgttagggactaaagtgataac 30970612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 16979242 - 16979182
Alignment:
Q  43 agtttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||| |||||||||||||||| |||| |||| ||||||| |||||| ||  |||||||||    
T  16979242 agtttgaggatattgatttttgattcaggaaccaaagtgaccattttttatcttcacttta 16979182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 21622066 - 21621919
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    |||||||| ||||||||||| |||  ||||||| |||||| ||||||||||||| |  ||  ||||  |||||||||| |||||| |||||  |||  ||    
T  21622066 ggatattggtttttggttcaggaatcaaagtgaccattttatactttcactttagtgcttgtgacacatcatactcctcgtcagcgtaaaatctttgtca 21621967  T
Q  150 cctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    | | ||||||||||||||||||||||||  | ||||||||||||||||    
T  21621966 catcatcagttaacataattatttaacatcagggactaaagtgataac 21621919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 26172822 - 26172969
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacc 151  Q
    ||||||||||||| |||| ||||||||||||| |||||||||| |||||||| || ||  |||| ||||||||||||||   |||||||||| | ||||     
T  26172822 atattgatttttgattcaggaactaaagtgattattttctactgtcactttagtcattgtgacacctcatactccttgttgacataaaacatgtgccaca 26172921  T
Q  152 taatca--gttaacataattatttaacactaaggactaaagtgataac 197  Q
    | ||||   ||||||||||| ||||||   | ||||||||||||||||    
T  26172922 ttatcacttttaacataattttttaacggcatggactaaagtgataac 26172969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 21623023 - 21623144
Alignment:
Q  76 aaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaa 175  Q
    ||||||| ||||||||||||||| |||| ||| |  |||| ||||||||||||||||| ||||||| | | |||| | || |||||||||||||||||||    
T  21623023 aaagtgaccattttctactttcattttagtctctgtgacacctcatactccttgtcagtataaaacttgtgccacatcattagttaacataattatttaa 21623122  T
Q  176 cactaaggactaaagtgataac 197  Q
    |     ||||||||||||||||    
T  21623123 cgtcggggactaaagtgataac 21623144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 2786465 - 2786340
Alignment:
Q  51 gatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccac 150  Q
    |||||||||||| ||||||   || ||||||| ||||||||||||| |||||||||  || ||||  |||||||| |||| |||||| ||  |||  |||    
T  2786465 gatattgattttcggttcagagaccaaagtgaccattttctacttttactttaatccatatgacacttcatactctttgtgagcatacaatctttgtcac 2786366  T
Q  151 ctaatcagttaacataattatttaac 176  Q
     | ||||||||||| |||||||||||    
T  2786365 attatcagttaacaaaattatttaac 2786340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 32244491 - 32244370
Alignment:
Q  76 aaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaa 175  Q
    ||||||| |||||| ||||||||||||| ||| |  |||| | ||||||| ||||||||||||||| ||   | | | |||| |||||||||||||||||    
T  32244491 aaagtgaccattttttactttcactttagtctctgtgacaccccatactctttgtcagcataaaaccttcgtcgcgtcatcacttaacataattatttaa 32244392  T
Q  176 cactaaggactaaagtgataac 197  Q
    |  || |||| |||||||||||    
T  32244391 cgttatggaccaaagtgataac 32244370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 32244603 - 32244715
Alignment:
Q  85 attttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaagga 184  Q
    ||||| ||||||||||||| ||  |  |||| ||||||||||||||||||||||||  |||  ||| | ||| ||||||| |||||||||||   | |||    
T  32244603 attttttactttcactttagtcactgtgacacctcatactccttgtcagcataaaatctttgtcacgtcatcggttaacaaaattatttaacgtcaggga 32244702  T
Q  185 ctaaagtgataac 197  Q
    |||||||||||||    
T  32244703 ctaaagtgataac 32244715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 24753477 - 24753588
Alignment:
Q  86 ttttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggac 185  Q
    |||| ||||||||||||| |||    |||| ||||  ||| ||| ||||||||||| ||| |||| | ||||||||||| ||||||||||| | || |||    
T  24753477 ttttttactttcactttagtctccgtgacacctcaatctctttgacagcataaaacttttgccacatcatcagttaacaaaattatttaacgcgaatgac 24753576  T
Q  186 taaagtgataac 197  Q
    ||||||||||||    
T  24753577 taaagtgataac 24753588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 26170816 - 26170737
Alignment:
Q  117 ctcatactccttgtcagcataaaacattttccacctaatcagttaacataattatttaacactaaggactaaagtgataa 196  Q
    ||||||||||||||||||||||||||| |  ||| | |||| |||||| |||| |||||||  | |||||||||||||||    
T  26170816 ctcatactccttgtcagcataaaacatgtgtcacatcatcacttaacaaaattttttaacagcatggactaaagtgataa 26170737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 19050484 - 19050426
Alignment:
Q  45 tttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||| ||||||||||||||| |||| | || |||||||||||||| |||||||||||||    
T  19050484 tttagggatattgatttttgcttcaaggaccaaagtgatcattttatactttcacttta 19050426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 47878386 - 47878436
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  47878386 atattgatttttggttcagggaccaaagtgaccattttctactttcacttt 47878436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 42278272 - 42278220
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||||| | || ||||||| ||||||||| |||||||||    
T  42278272 ggatattgatttttggttcagggaccaaagtgaccattttctagtttcacttt 42278220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 47874786 - 47874734
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||||| | || ||||||| |||||| ||||||||||||    
T  47874786 ggatattgatttttggttcaaggaccaaagtgaccattttatactttcacttt 47874734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 48739944 - 48739999
Alignment:
Q  54 attgatttttggttcacgaactaaagtgatcattttctactttcactttaatcttt 109  Q
    |||||||||||||||| | ||||||||||  ||||| ||||||||||||| |||||    
T  48739944 attgatttttggttcagggactaaagtgactattttttactttcactttagtcttt 48739999  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 42391794 - 42391839
Alignment:
Q  58 atttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||| ||||| | |||||||||| ||||||||||||||||||||    
T  42391794 atttttagttcagggactaaagtgaccattttctactttcacttta 42391839  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 40206118 - 40205978
Alignment:
Q  57 gatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttccacctaatc 156  Q
    |||||| |||||| | || ||||||| |||||| |||||||||||||  | ||  |||| ||||  | ||||||||||| ||||||||| |||||| ||     
T  40206118 gattttcggttcaaggaccaaagtgaccattttatactttcactttagcccttgtgacaactcacgcaccttgtcagcacaaaacatttgccacctcatt 40206019  T
Q  157 agttaacataattatttaacactaaggactaaagtgataac 197  Q
    ||||||||||||| |||||| | || ||||||| |||||||    
T  40206018 agttaacataattttttaacgccaatgactaaactgataac 40205978  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 45599111 - 45599054
Alignment:
Q  46 ttaaggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||| |||||||||||||||||| |||||||||||| ||||||||||||||| ||||    
T  45599111 ttaagaatattgatttttggttcaggaactaaagtgaccattttctactttcatttta 45599054  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 53957896 - 53957844
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||||| | |||||||| |||||||||||||||||||||    
T  53957896 ggatattgatttttggttcatggactaaagtaatcattttctactttcacttt 53957844  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 33427954 - 33427901
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| |  |||||||||| |||||||||||||||||||    
T  33427954 ggatattgatttttggttcaggggctaaagtgataattttctactttcacttta 33427901  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 48574359 - 48574411
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||| |||||||||| | |||||||||| |||||||||||||||||||    
T  48574359 ggatattgaattttggttcaaggactaaagtgaccattttctactttcacttt 48574411  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 55388282 - 55388230
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  55388282 ggatattgatttttggttcagggaccaaagtgaccattttctactttcacttt 55388230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 33837386 - 33837331
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaat 105  Q
    |||||||||||||||||||| | || ||||||| ||||||||||||||| ||||||    
T  33837386 ggatattgatttttggttcagggaccaaagtgaccattttctactttcattttaat 33837331  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 48808593 - 48808543
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | || ||||||| |||||||||||||||||||    
T  48808593 atattgatttttggttcagggaccaaagtgaccattttctactttcacttt 48808543  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 612457 - 612404
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| |   |||| ||||||||||||||||||||||||    
T  612457 ggatattgatttttggttcatgggttaaattgatcattttctactttcacttta 612404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 19114736 - 19114683
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||||||||||||| |||| | | |||||||| ||||||||||||||||||||    
T  19114736 ggatattgatttttgattcagggattaaagtgaccattttctactttcacttta 19114683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 19115067 - 19115120
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||| ||||| | ||||||||| | |||||||||||||||||||    
T  19115067 ggatattgatttttagttcatggactaaagtggttattttctactttcacttta 19115120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 47075271 - 47075324
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| | ||||||||||  |||||||||||| ||||||    
T  47075271 ggatattgatttttggttcagggactaaagtgacaattttctactttaacttta 47075324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 52318217 - 52318269
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||| ||||||||||| | || ||||||| |||||||||||||||||||    
T  52318217 ggatattgttttttggttcatggaccaaagtgaccattttctactttcacttt 52318269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 36827355 - 36827502
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagcataaaacattttcca 149  Q
    ||||||||||||| | |||| | || ||| | ||||||||||| |||||||||| ||  |  || |  |||  |||||| ||||||||||||||||  ||    
T  36827355 ggatattgattttcgattcagggaccaaaataatcattttctattttcactttagtccctgtgatacttcacgctccttctcagcataaaacatttgtca 36827454  T
Q  150 cctaatcagttaacataattatttaacactaaggactaaagtgataac 197  Q
    | | |||| |||||| ||||||||||||  |  |||||||||||||||    
T  36827455 catcatcacttaacaaaattatttaacatcagagactaaagtgataac 36827502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 47428485 - 47428536
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||| |||||||||||| | |||||||||| ||||| ||||||||||||||    
T  47428485 atattaatttttggttcagggactaaagtgaccatttcctactttcacttta 47428536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 48809557 - 48809608
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||| | |  ||||||| ||||||||||||||||||||    
T  48809557 atattgatttttggttcatggatcaaagtgaccattttctactttcacttta 48809608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 48573206 - 48573156
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||| | |  ||||||| |||||||||||||||||||    
T  48573206 atattgatttttggttcatggatcaaagtgaccattttctactttcacttt 48573156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 49261101 - 49261055
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttca 98  Q
    |||||||||||||||| | ||| ||||||||| ||||||||||||||    
T  49261101 atattgatttttggtttaggaattaaagtgataattttctactttca 49261055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 55389371 - 55389421
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||| |||||| | || ||||||| |||||||||||||||||||    
T  55389371 atattgattttcggttcagggaccaaagtgaccattttctactttcacttt 55389421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 17700739 - 17700690
Alignment:
Q  53 tattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    ||||||||||| ||||| | || ||||||| |||||||||||||||||||    
T  17700739 tattgattttttgttcagggaccaaagtgaccattttctactttcacttt 17700690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 20464312 - 20464259
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    ||||||||||||||| |||| | || ||||||| ||||||||||||||| ||||    
T  20464312 ggatattgatttttgattcatggaccaaagtgaccattttctactttcatttta 20464259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 45600859 - 45600916
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatct 107  Q
    |||||||||||||||||||| | |||||| ||  |||||| |||||||||||| ||||    
T  45600859 ggatattgatttttggttcaaggactaaactggccattttttactttcactttgatct 45600916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 47117972 - 47118024
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| | |||||||||| || |||||| ||||||||||    
T  47117972 ggatattgatttttggttcagggactaaagtgacca-tttctattttcacttta 47118024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 36279175 - 36279123
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||  ||||||||||| | || ||||||| |||||||||||||||||||    
T  36279175 ggatatttttttttggttcagggaccaaagtgaccattttctactttcacttt 36279123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 6468733 - 6468787
Alignment:
Q  52 atattgatttttggttcacgaactaaagtgatcattttctactttcactttaatc 106  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||    
T  6468733 atattgatttttggttcaagaaccaaattgatcattttctactttcactttaatc 6468787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 31239867 - 31239920
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||    
T  31239867 ggatattgatttttggttcaagaacaaaagtgaccattttctactttgacttta 31239920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 10856036 - 10855991
Alignment:
Q  58 atttttggttcacgaactaaagtgatcattttctactttcacttta 103  Q
    |||| ||||||| | |||||||||| ||||||||||||||||||||    
T  10856036 atttatggttcaaggactaaagtgaacattttctactttcacttta 10855991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 30748234 - 30748149
Alignment:
Q  49 aggatattgatttttggttcacgaactaaagtgatcattttctactttcactttaatctttacgacagctcatactccttgtcagc 134  Q
    |||||||||||||||| |||| | || ||| ||| |||||| ||||||||||||| ||  |  ||||  |||||||||||||||||    
T  30748234 aggatattgatttttgattcagggaccaaattgaccattttttactttcactttagtccctgtgacacgtcatactccttgtcagc 30748149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 6133 - 6185
Alignment:
Q  50 ggatattgatttttggttcacgaactaaagtgatcattttctactttcacttt 102  Q
    |||||||||||||||||||| | || ||||||| |||||| ||||||||||||    
T  6133 ggatattgatttttggttcagggaccaaagtgaccattttttactttcacttt 6185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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