View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20629_low_2 (Length: 300)
Name: NF20629_low_2
Description: NF20629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20629_low_2 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
| [»] scaffold0912 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 27436502 - 27436779
Alignment:
| Q |
18 |
gttgtaccaatgacgcgtgcaaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacc |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27436502 |
gttgtagcaatgacgcgtgcaaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacc |
27436601 |
T |
|
| Q |
118 |
cggttatataattgtcttcatcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgt-- |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| | || |
|
|
| T |
27436602 |
cggttatataactgtcttcatcttttaatgcatccaaaagctctttgtatttggattccctgcttttaaaatgaatatagtgtcgggatgaatgaagttc |
27436701 |
T |
|
| Q |
216 |
----tcaggaagatgagcagggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
|| ||| || ||||| || || ||||| ||| ||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
27436702 |
tacatctggacgacgagcaaggggtgcaattgaaagttcctttccagtttcaatcaatcttttaattcgctccttctt |
27436779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 28176360 - 28176103
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
|||||||||||| | ||||| | | ||||| ||||| ||||||||||||||||||||||||||||||| || | ||||||| ||| |||||||| ||| |
|
|
| T |
28176360 |
aaattgtttggactgcttaagttccttaccaacttctttggccaatgtagtttttcctgtgccccccattcctttcaacccgattacataattgttgtca |
28176261 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| | |||||||||| ||||| |||||| |||||| |
|
|
| T |
28176260 |
tctttcaatgcatccaaaagctctttgtatttggattccctacttttaaaaggaatatagtgttgggatgaataacgttcaacacctggaagacgagcag |
28176161 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
28176160 |
ggagtccaattgaaagttcctttccagtttcaattaatcttttaatttgctccttctt |
28176103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 25 - 289
Target Start/End: Complemental strand, 27996957 - 27996687
Alignment:
| Q |
25 |
caatgacgcgtgcaaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttat |
124 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| | | ||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
27996957 |
caatgacgcatgcaaattgtttggattccataagttccttacccacttctatggccattctagtttttcctgtgccccccatccctatcaacccgattac |
27996858 |
T |
|
| Q |
125 |
ataattgtcttcatcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ |
218 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||||||||||| |||||||| |||||||| |||||||| | |||||||| | ||||| |
|
|
| T |
27996857 |
ataattgttgtcatctttcaatgcttccaaaagctctttgtattgggattccctacttttaaatgtaatatagtgttgggatgaatgacgttcaacacct |
27996758 |
T |
|
| Q |
219 |
ggaagatgagcagggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27996757 |
ggaagaggagcagggagtccaattgaaagttcctttccagtttcaatcaatcttttaatttgctccttctt |
27996687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 28045752 - 28045495
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
|||||||||||| | ||||| | | ||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||| |
|
|
| T |
28045752 |
aaattgtttggagtgcttaagttccttacccacttctttggccaatgtagtttttcctgtgccccccatcccttgcaacctggttatataattgttgtca |
28045653 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| ||||||| |||| |||| |||||||| | |||||||||| ||||| ||||||||| ||| |
|
|
| T |
28045652 |
tctttcagagcatctaaaagctctttgtatttgaattccctactttcaaaagaaatatagtgtttggatgaataacgttcaacatctggaagatgaccag |
28045553 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
28045552 |
ggagtccaattacaagatcctttctagtttcaattaattttttaattttctccttctt |
28045495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 28077737 - 28077480
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
|||||||| ||| | ||||| | | ||||| ||||| ||||||||||||||||||||||||||||||| || | ||||||| ||| |||||||| ||| |
|
|
| T |
28077737 |
aaattgttgggactgcttaagttccttaccaacttctttggccaatgtagtttttcctgtgccccccattcctttcaacccgattacataattgttgtca |
28077638 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||| | |||||||||| ||||| |||||| |||||| |
|
|
| T |
28077637 |
tctttcaatgcatccaaaagctctttgtgtttggattccctacttttaaaaggaatatagtgttgggatgaataacgttcaacacctggaagacgagcag |
28077538 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
28077537 |
ggagtccaattgaaagttcctttccagtttcaattaatcttttaatttgctccttctt |
28077480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 28128268 - 28128011
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
|||||||||| ||| ||||| | | || |||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||||||| ||| ||| |
|
|
| T |
28128268 |
aaattgtttgaattgcttaagttccttccccacttctttggccattgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtca |
28128169 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| |||| || |||| |||| |||||||||| |||||||||| ||||| |||||| |||||| |
|
|
| T |
28128168 |
tctttcagagcatcaaaaagctctttgtatttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcag |
28128069 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
28128068 |
ggagtccaattacaagatcctttccattttcaatcaatcttttaatttgctccttctt |
28128011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 28142199 - 28141942
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
|||||||||| ||| ||||| | | || ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| ||| |
|
|
| T |
28142199 |
aaattgtttgcattgcttaagttccttccccacttttttggccaatgtagtttttcctgtgccccccatcccttgcaacccggttatataactgttgtca |
28142100 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| |||| || |||| |||| |||||||||| |||||||||| ||||| |||||| |||||| |
|
|
| T |
28142099 |
tctttcagagcatcaaaaagctctttgtatttggattttctactttcaaaagaaatatagtctctggatgaataacgttcaacatctggaagaggagcag |
28142000 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
28141999 |
ggagtccaattacaagatcctttccattttcaatcaatcttttaatttgctccttctt |
28141942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 28474096 - 28474353
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
|||||||||||||| ||||| | | ||||||||||| |||| || ||||||||||||||||||||||||||| | ||||||||||||| |||||| ||| |
|
|
| T |
28474096 |
aaattgtttggattgcttaagttccttacccacttctatggacattgtagtttttcctgtgccccccatcccttgcaacccggttataaaattgttgtca |
28474195 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| |||||||| ||||||||| ||||||||| | ||||||||| ||||| |||||| |||||| |
|
|
| T |
28474196 |
tctttcagagcatctaaaagctctttgtatttggattccctacttttaaaaggaatatagtgttgggatgaatagcgttcaacatctggaagacgagcag |
28474295 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||| ||||||| ||| ||||||||||||| ||||||| || |||| ||||||||||| |
|
|
| T |
28474296 |
ggaatccaatttgaagttcctttccagtttgaatcaatcttgtaatctgctccttctt |
28474353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 28499548 - 28499805
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
|||||||||||| | ||||| | | ||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||| |
|
|
| T |
28499548 |
aaattgtttggactgcttaagttccttaccaacttctctggccaatgtagtttttcctgtgccccccatcccttgcaacccggttataaaattgttgtca |
28499647 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| |||||||| ||||||||| ||||||||| | |||||||||| ||||| |||||| | |||| |
|
|
| T |
28499648 |
tctttcatagcatctaaaagctctttgtatttggattccctacttttaaaaggaatatagtgttgggatgaataacgttcaacatctggaagacgggcag |
28499747 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||||| ||||| ||| | ||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
28499748 |
ggagttcaattgaaagttgctttccagtttcaattaatcttttcatttgctccttctt |
28499805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 28515115 - 28515372
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
|||||||||||| | ||||| | | ||||| ||||| |||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||| ||| |
|
|
| T |
28515115 |
aaattgtttggactgcttaagttccttaccaacttctttggccaatgtagtttttcctgttccccccatcccttgcaacccgattatataattgttgtca |
28515214 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| |||||||||||||||||| ||||||||| | |||||||||| ||||| |||||| | |||| |
|
|
| T |
28515215 |
tctttcagagcatctaaaagctctttgtatttagattccctgcttttaaaaggaatatagtgttgggatgaataacgttcaacatctggaagacgggcag |
28515314 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||||| ||||| ||| | ||||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
28515315 |
ggagttcaattgaaagttgctttccagtttcaattaatattttcattttctccttctt |
28515372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 63 - 280
Target Start/End: Complemental strand, 27961183 - 27960960
Alignment:
| Q |
63 |
ttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctt |
162 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||||||||||||||| | |||||| || ||||| |||| ||||| || ||||||||||||||||||| |
|
|
| T |
27961183 |
ttacccacttccttgaccattgtagtttttcctgtgccccccatcccttgcaacccagtcatatagttgttgtcatcattcaatgcatccaaaagctctt |
27961084 |
T |
|
| Q |
163 |
tgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcagggagtccaattacaagatcctttcc |
256 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| | |||||||||| ||||| |||||||| ||||| |||||||| | ||| |||||||| |
|
|
| T |
27961083 |
tgtatttgaattccctgcttttaaaaggaatatagtgttgggatgaataacgttcaatatctggaagatgggcaggaagtccaatcaaaagttcctttcc |
27960984 |
T |
|
| Q |
257 |
agtttcaatcaatattttaatttg |
280 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
27960983 |
agtttcaatcaatatttttatttg |
27960960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 17751119 - 17751376
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
||||| |||||||| ||||| | | ||||| ||||| | |||||||||||||||||||||||||||||||| | ||||||| ||| |||||||| ||| |
|
|
| T |
17751119 |
aaattttttggattgcttaagttccttaccaacttcttttgccaatgtagtttttcctgtgccccccatccctttcaacccgattacataattgttgtca |
17751218 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgt------tcaggaagatgagcag |
231 |
Q |
| |
|
||||| |||| ||||||||||||||||||| | ||||| ||||||||||| ||||||||| | |||||||||| || || |||||| |||||| |
|
|
| T |
17751219 |
tctttcaatgaatccaaaagctctttgtatcttgattctctgcttttaaagggaatatagtgttgggatgaataacgttctacatctggaagacgagcag |
17751318 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| || | |||||||| ||||| |
|
|
| T |
17751319 |
ggagtccaattgaaagttcctttccagtttcaatcaatcttctgatttgctcgttctt |
17751376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 19052439 - 19052696
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
||||| |||||||| ||||| | | ||||| ||||| | |||||||||||||||||||||||||||||||| | ||||||| ||| |||||||| ||| |
|
|
| T |
19052439 |
aaattttttggattgcttaagttccttaccaacttcttttgccaatgtagtttttcctgtgccccccatccctttcaacccgattacataattgttgtca |
19052538 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgt------tcaggaagatgagcag |
231 |
Q |
| |
|
||||| |||| ||||||||||||||||||| | ||||| ||||||||||| ||||||||| | |||||||||| || || |||||| |||||| |
|
|
| T |
19052539 |
tctttcaatgaatccaaaagctctttgtatcttgattctctgcttttaaagggaatatagtgttgggatgaataacgttctacatctggaagacgagcag |
19052638 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| || | |||||||| ||||| |
|
|
| T |
19052639 |
ggagtccaattgaaagttcctttccagtttcaatcaatcttctgatttgctcgttctt |
19052696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 281
Target Start/End: Original strand, 27466137 - 27466399
Alignment:
| Q |
25 |
caatgacgcgtgcaaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttat |
124 |
Q |
| |
|
|||||||| | | |||||||||||||| ||||| | | ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
27466137 |
caatgacgtgggtaaattgtttggatttcttaagttccttacccacttctttggccaatgtagtttttcctgtgccccccatcccttgcaacccggttat |
27466236 |
T |
|
| Q |
125 |
ataattgtcttcatcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatg------ttca |
218 |
Q |
| |
|
|||||||| |||||| | ||||| ||||||||||||||||| |||||||| |||| |||| |||||||| | ||||||||| | || |
|
|
| T |
27466237 |
ataattgttgcaatctttcagagcatctaaaagctctttgtatttggattccctactttcaaaagaaatatagtgagaagatgaataacgctcgacatct |
27466336 |
T |
|
| Q |
219 |
ggaagatgagcagggagtccaattacaagatcctttccagtttcaatcaatattttaatttgc |
281 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
27466337 |
ggaagacgagcagggagtccaattgcaagttcctttctagtttcaatcagctttttaatttgc |
27466399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 27908128 - 27907871
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
|||||||||||| | ||||| | | ||||| ||||| ||||||| |||||||||||||||||||||||||| | ||| || ||||||||||||| ||| |
|
|
| T |
27908128 |
aaattgtttggactgcttaagttccttaccaacttctttggccaacgtagtttttcctgtgccccccatcccttgcaagccagttatataattgttgtca |
27908029 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| ||||||||||||||| | ||||||| ||||||||||||||||||||| ||||| | |||||||||| ||||| ||| | | |||| |
|
|
| T |
27908028 |
tctttcaatgcatccaaaagcattctgtattttaattccctgcttttaaaatgaaaatagtgttgggatgaataacgttcaacatctggataacgggcag |
27907929 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||||| ||||| ||| | ||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
27907928 |
ggagttcaattgaaagttgctttccagtttcaattaatcttttcatttgctccttctt |
27907871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 289
Target Start/End: Complemental strand, 27950511 - 27950254
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
|||||||||||| | ||||| | | ||||| ||||| ||||||| ||||||||||||||||||||||||| | ||||||| ||| |||||||| ||| |
|
|
| T |
27950511 |
aaattgtttggactgcttaagttccttaccaacttctttggccaacatagtttttcctgtgccccccatccctttcaacccgattacataattgttgtca |
27950412 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| || ||||||||||||| ||||| || |||| |||||||| ||||||||||||| || || ||||| |||||| |||||| |||||| |
|
|
| T |
27950411 |
tctttcaaagcatccaaaagctggttgtagttggatttcctgctttcaaaatgaatatagacttgcgacgaatattgttcaacatctggaagaagagcag |
27950312 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||| ||||||| ||| |||||||||| || ||||||| |||||||| ||||||||| |
|
|
| T |
27950311 |
ggactccaattgaaagttcctttccagattgaatcaatcttttaattgtctccttctt |
27950254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 26622798 - 26622673
Alignment:
| Q |
63 |
ttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctt |
162 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||||||||||||| | ||| ||||||||||| |||| ||||||||| ||||||||| | |||| |
|
|
| T |
26622798 |
ttacccacttctatggccaatgtagttttcctagtgccccccatcccttgcaatccggttatatagttgttgccatcttttagtgcatccaacaattctt |
26622699 |
T |
|
| Q |
163 |
tgtatttcgattccctgcttttaaaa |
188 |
Q |
| |
|
||||||| || || |||||||||||| |
|
|
| T |
26622698 |
tgtattttgactctctgcttttaaaa |
26622673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 289
Target Start/End: Complemental strand, 11407097 - 11406870
Alignment:
| Q |
68 |
cacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctttgtat |
167 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||| || ||| | ||||| || |||||| |
|
|
| T |
11407097 |
cacttcaataaccaatgtagtttttcctgtgccccccatcccatgcaacccgattataaaattgttgtcatctttcaaagcaactaaaagatcattgtat |
11406998 |
T |
|
| Q |
168 |
ttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcagggagtccaattacaagatcctttccagttt |
261 |
Q |
| |
|
| ||| || ||| |||| ||||||| | | ||| |||||| |||| |||||| |||||| || ||||||| ||| | || |||||||| |
|
|
| T |
11406997 |
taagataaactaatttaaaaaggaatatactgtccgggtgaatagcattcaacatctggaagacgagcagtgaatccaattgaaagtttctctccagttt |
11406898 |
T |
|
| Q |
262 |
caatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
11406897 |
caatcaatcttttaatttgctccttctt |
11406870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 18725144 - 18725251
Alignment:
| Q |
63 |
ttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctt |
162 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| || | ||| | |||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
18725144 |
ttacccacttcttttgccaatgtagtttttcctgtgccccccattccttgcaatctagttatataattgctgtcatctcttagtgcatccaaaagctctt |
18725243 |
T |
|
| Q |
163 |
tgtatttc |
170 |
Q |
| |
|
||||||| |
|
|
| T |
18725244 |
cgtatttc |
18725251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 27403167 - 27403272
Alignment:
| Q |
63 |
ttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctt |
162 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||| |||||||| | ||| ||||||||||| |||| |||||||| | ||||||||| || |||| |
|
|
| T |
27403167 |
ttacccacttttatggccaaagtagtttttccggtgccacccatcccttgcaatccggttatatagttgttgtcatctttcagtgcatccaacagttctt |
27403266 |
T |
|
| Q |
163 |
tgtatt |
168 |
Q |
| |
|
|||||| |
|
|
| T |
27403267 |
tgtatt |
27403272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 27368598 - 27368499
Alignment:
| Q |
63 |
ttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctt |
162 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| || | ||| |||||||||||||| ||||||| || |||| |||||||||||| |
|
|
| T |
27368598 |
ttacccacttcttttgccaatgtagtttttcctgtgccccccattccgtgcaatccggttatataattactttcatctcgtagtgcagccaaaagctctt |
27368499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 18033525 - 18033615
Alignment:
| Q |
64 |
tacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaa |
154 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||| |||||||| | ||| ||||||||||| |||| |||||||| | ||||||||| |
|
|
| T |
18033525 |
tacccacttttatggccaaagtagtttttccggtgccacccatcccttgcaatccggttatatagttgttgtcatctttcagtgcatccaa |
18033615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 18083078 - 18083131
Alignment:
| Q |
135 |
tcatcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaa |
188 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
18083078 |
tcatcttttattgcatccaaaagctctttgtatttcaactctctgcttttaaaa |
18083131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 27342308 - 27342201
Alignment:
| Q |
63 |
ttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctt |
162 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| || ||| | || ||||||||| |||||| ||| |||||||||||| |||| |
|
|
| T |
27342308 |
ttacccacttcttttgccaatgtagtttttcctgtgccccccattcctcgcaatgcagtaatataattgctgtcatctcttagtgcatccaaaagatctt |
27342209 |
T |
|
| Q |
163 |
tgtatttc |
170 |
Q |
| |
|
||||||| |
|
|
| T |
27342208 |
cgtatttc |
27342201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 26119008 - 26119117
Alignment:
| Q |
78 |
gccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctttgtatttcgattccc |
177 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||| || ||||| || |||||||||| |||||||||||||||| ||||||| | || | |
|
|
| T |
26119008 |
gccaatgtagtttttccagcaccccccatcccatgcaatccaaccatatagttactgtcatcttttattgcatccaaaagctctacgtatttcaactctc |
26119107 |
T |
|
| Q |
178 |
tgcttttaaa |
187 |
Q |
| |
|
|||||||||| |
|
|
| T |
26119108 |
tgcttttaaa |
26119117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 26241272 - 26241381
Alignment:
| Q |
78 |
gccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctttgtatttcgattccc |
177 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||| ||| || ||||| |||| || ||||||| ||||||||||||||||||| | ||| | || | |
|
|
| T |
26241272 |
gccaatgttgtttttccagcaccccccatcccatgcaatccaaccatatagttgttgtcgtcttttagtgcatccaaaagctctttggacttcaactctc |
26241371 |
T |
|
| Q |
178 |
tgcttttaaa |
187 |
Q |
| |
|
|||||||||| |
|
|
| T |
26241372 |
tgcttttaaa |
26241381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 27771684 - 27771575
Alignment:
| Q |
54 |
ttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatcca |
153 |
Q |
| |
|
|||| ||| ||||||||||| |||| ||||||||||| || |||| ||||| || | |||||||||||| || |||| ||||||||| | || |||| |
|
|
| T |
27771684 |
ttaagtgctttacccacttctttggctaatgtagttttaccgatgcctcccataccttgcaacccggttatgtagttgttttcatctttcagtgattcca |
27771585 |
T |
|
| Q |
154 |
aaagctcttt |
163 |
Q |
| |
|
|||| ||||| |
|
|
| T |
27771584 |
aaagttcttt |
27771575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 42 - 289
Target Start/End: Original strand, 8696468 - 8696719
Alignment:
| Q |
42 |
tgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatctt |
141 |
Q |
| |
|
|||||||||| ||||| | | ||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||| ||| |||||||| ||||||| |
|
|
| T |
8696468 |
tgtttggattgcttaagttccttaccaacttctttggccaatgtagtttttcctgtgccccccatccctttcaacccgattacataattgttgtcatctt |
8696567 |
T |
|
| Q |
142 |
ttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcagggag |
235 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||| |||| ||||| ||||||||| | |||||||||| ||||| |||||| ||||||||| |
|
|
| T |
8696568 |
tcaatgcatccaaaagctctttgtatttggattcctggcttctaaaaggaatatagtgttgggatgaataacgttcaacacctggaagacaagcagggag |
8696667 |
T |
|
| Q |
236 |
tccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||||||| ||| |||||||||| ||||| ||| |||||||||||| |||||| |
|
|
| T |
8696668 |
tccaattgaaagttcctttccag--tcaattaatcttttaatttgcttcttctt |
8696719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 9332041 - 9332298
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
||||| |||||||| ||||| | | ||||| | ||| ||| |||||||| ||||||||||||| ||||||| | ||||||| ||| | |||||| || |
|
|
| T |
9332041 |
aaattttttggattgcttaagttccttaccaatttctttggtcaatgtaggttttcctgtgcccgccatccctttcaacccgattacaaaattgttgtcg |
9332140 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||| | | |||||||||| ||||| |||||| |||||| |
|
|
| T |
9332141 |
tctttcaatgcatccaaaagctctttgtatttggattccctacttttaaaaggaatataatgttgggatgaataacgttcaacatctggaagacgagcag |
9332240 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||||||||||| ||| |||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
9332241 |
ggagtccaattgaaagttcctttaccgtttcaatcaatcttttaatttgctccttctt |
9332298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 9385824 - 9386081
Alignment:
| Q |
38 |
aaattgtttggattccttaactgcgttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttca |
137 |
Q |
| |
|
||||| |||||||| ||||| | | ||||| | ||| ||| |||||||| ||||||||||||| ||||||| | ||||||| ||| | |||||| || |
|
|
| T |
9385824 |
aaattttttggattgcttaagttccttaccaatttctttggtcaatgtaggttttcctgtgcccgccatccctttcaacccgattacaaaattgttgtcg |
9385923 |
T |
|
| Q |
138 |
tcttttaatgcatccaaaagctctttgtatttcgattccctgcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcag |
231 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||| | | |||||||||| ||||| |||||| |||||| |
|
|
| T |
9385924 |
tctttcaatgcatccaaaagctctttgtatttggattccctacttttaaaaggaatataatgttgggatgaataacgttcaacatctggaagacgagcag |
9386023 |
T |
|
| Q |
232 |
ggagtccaattacaagatcctttccagtttcaatcaatattttaatttgctccttctt |
289 |
Q |
| |
|
||||||||||| ||| |||||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
9386024 |
ggagtccaattgaaagttcctttaccgtttcaatcaatcttttaatttgctccttctt |
9386081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 289
Target Start/End: Complemental strand, 22257 - 22041
Alignment:
| Q |
79 |
ccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctttgtatttcgattccct |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || |||||||||| |||||| |||||||| || ||||| ||||||||||||||||||||| || |
|
|
| T |
22257 |
ccaatgtagtttttcctgtgccccccatcccttgcatcccggttataaaattgttgtcatctttcaaagcatctaaaagctctttgtatttcgatggact |
22158 |
T |
|
| Q |
179 |
gcttttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcagggagtccaattacaagatcctttccagtttcaatcaatatt |
272 |
Q |
| |
|
||| |||| ||||||| | | ||| |||||| |||| |||||| |||||| || ||||||| ||| | || |||||||||||||||| || |
|
|
| T |
22157 |
aatttcaaaaggaatatactgtccgggtgaatagcattcaacatctggaagacgagcagtgaatccaattgaaagtttctctccagtttcaatcaatctt |
22058 |
T |
|
| Q |
273 |
ttaatttgctccttctt |
289 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22057 |
ttaatttgctccttctt |
22041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 289
Target Start/End: Original strand, 26028453 - 26028665
Alignment:
| Q |
83 |
tgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctttgtatttcgattccctgctt |
182 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||| |||||||||||| || ||||| | | ||| ||||||||| ||||||| ||||| |||||| |
|
|
| T |
26028453 |
tgtagtttttcttgtgccccccatcccttgtaacccgattatataattgttgtcgtctttcagtacattcaaaagctcaatgtatttagattctctgctt |
26028552 |
T |
|
| Q |
183 |
ttaaaatgaatatagtctgcggatgaataatgttca------ggaagatgagcagggagtccaattacaagatcctttccagtttcaatcaatattttaa |
276 |
Q |
| |
|
|||||| |||||||| | |||||||| ||||| |||||| |||||||||||||||| |||| |||||||||||||| | |||| |||||| |
|
|
| T |
26028553 |
ttaaaagaaatatagtgttgagatgaatatcgttcaacatctagaagataagcagggagtccaattgcaagttcctttccagtttccaacaattttttaa |
26028652 |
T |
|
| Q |
277 |
tttgctccttctt |
289 |
Q |
| |
|
| || |||||||| |
|
|
| T |
26028653 |
tatgttccttctt |
26028665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 74953 - 75060
Alignment:
| Q |
63 |
ttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctt |
162 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| || | ||| || || |||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
74953 |
ttacccacttcttttgccaatgtagtttttcctgtgccccccattccttgcaatccagtaatataattgttgtcatctcttagtgcatccaaaagctctt |
75052 |
T |
|
| Q |
163 |
tgtatttc |
170 |
Q |
| |
|
||||||| |
|
|
| T |
75053 |
cgtatttc |
75060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0912
Description:
Target: scaffold0912; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 872 - 979
Alignment:
| Q |
63 |
ttacccacttcaatggccaatgtagtttttcctgtgccccccatcccatacaacccggttatataattgtcttcatcttttaatgcatccaaaagctctt |
162 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| || | ||| || | || |||||||| |||||| ||| |||||| |||||||||| |
|
|
| T |
872 |
ttacccacttcttttgccaatgtagtttttcctgtgccccccattccttgcaatccagataaataattgttgtcatctcttagtgcatctaaaagctctt |
971 |
T |
|
| Q |
163 |
tgtatttc |
170 |
Q |
| |
|
|||||||| |
|
|
| T |
972 |
tgtatttc |
979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University