View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20629_low_4 (Length: 240)
Name: NF20629_low_4
Description: NF20629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20629_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 6580069 - 6580296
Alignment:
| Q |
3 |
cgaatgagaaaaccaagtgcaatgaaacgaactgtaagaaagtgaagcaattcgattgtctggtatatttgatttgactctttctaaagtttctttatta |
102 |
Q |
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| T |
6580069 |
cgaatgagaaaaccaagtgcaatgaaacgaactgtaagaaagtgaagcaattcgattgtttggtatatttgatttgactctttctaaagttcctttatta |
6580168 |
T |
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| Q |
103 |
tttccttcatcccaccatcaccacagagaaatttaaaggtaataactatattgatctgcataatgttgttgaagtgtagtttctagcccaggactttccg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6580169 |
tttccttcatcccaccatcaccacagagaaatttaaaggtaataactatattgatctgcataatgttgttgaagtgtagtttctagcccaggactttccg |
6580268 |
T |
|
| Q |
203 |
aacactttatcaagaaggctgatgatgt |
230 |
Q |
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|||||||| |||||||| |||||||||| |
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| T |
6580269 |
aacactttgtcaagaagactgatgatgt |
6580296 |
T |
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