View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2062_high_12 (Length: 320)

Name: NF2062_high_12
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2062_high_12
NF2062_high_12
[»] chr5 (5 HSPs)
chr5 (16-311)||(5775517-5775796)
chr5 (16-133)||(5768864-5768981)
chr5 (140-176)||(40197703-40197739)
chr5 (137-170)||(39074999-39075032)
chr5 (141-175)||(3247769-3247803)
[»] chr1 (5 HSPs)
chr1 (137-178)||(15646121-15646162)
chr1 (137-173)||(14321104-14321140)
chr1 (137-178)||(27858777-27858818)
chr1 (137-178)||(34767266-34767307)
chr1 (148-176)||(33776679-33776707)
[»] chr7 (1 HSPs)
chr7 (140-178)||(28749909-28749947)
[»] chr4 (7 HSPs)
chr4 (140-178)||(27924067-27924105)
chr4 (141-175)||(32004408-32004442)
chr4 (137-175)||(35803586-35803624)
chr4 (140-173)||(16467932-16467965)
chr4 (145-176)||(55292373-55292404)
chr4 (145-173)||(38179832-38179860)
chr4 (137-177)||(47769648-47769688)
[»] chr2 (3 HSPs)
chr2 (141-176)||(37807232-37807267)
chr2 (137-178)||(37985140-37985181)
chr2 (137-173)||(5963946-5963982)
[»] scaffold0024 (1 HSPs)
scaffold0024 (140-205)||(36209-36272)
[»] chr6 (3 HSPs)
chr6 (137-182)||(27133906-27133951)
chr6 (148-177)||(3807889-3807918)
chr6 (140-177)||(23898842-23898879)
[»] chr3 (3 HSPs)
chr3 (141-173)||(24924627-24924659)
chr3 (141-173)||(51672506-51672538)
chr3 (148-182)||(52201288-52201322)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 5775517 - 5775796
Alignment:
Q  16 aataataacagtgtaaattttgtttagacaactattgaatcaaatcaaatcacattataatcataatctcttacaacaattatagaaaccctaatctagt 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  5775517 aataataacagtgtaaattttgtttagacaattattgaatcaaatcaaatcacattataatcataatctcttacaataagtatagaaaccctaatctagt 5775616  T
Q  116 atttgattttttcagtgtttatttcaatgcataatttctatattaatcttcttaactagtgccttaaaaagacactagttaacattttcccttaattttt 215  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||| |||||||||    
T  5775617 gtttgattttttcagtgtttatttcaatgcataatttctatattaatcttcttaactagtgcc----------------taacattttccattaattttt 5775700  T
Q  216 aaccatatacatcaactttttaaccatcattttatttatactggcgttggatttcagtttatttataaaggcattggatttcacatggagtattat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5775701 aaccatatacatcaactttttaaccatcattttatttatactggcgttggatttcactttatttataaaggcattggatttcacatggagtattat 5775796  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 5768864 - 5768981
Alignment:
Q  16 aataataacagtgtaaattttgtttagacaactattgaatcaaatcaaatcacattataatcataatctcttacaacaattatagaaaccctaatctagt 115  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||    
T  5768864 aataataacagtgtaaattttgtttagacaactacagaattaaatcaaatcatattataatcatagtctcttacgacaagtatagaaaccctaatctagt 5768963  T
Q  116 atttgattttttcagtgt 133  Q
     |||||||||||||||||    
T  5768964 gtttgattttttcagtgt 5768981  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 40197703 - 40197739
Alignment:
Q  140 caatgcataatttctatattaatcttcttaactagtg 176  Q
    |||||||||||||||||||||||||||||||||||||    
T  40197703 caatgcataatttctatattaatcttcttaactagtg 40197739  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 170
Target Start/End: Complemental strand, 39075032 - 39074999
Alignment:
Q  137 tttcaatgcataatttctatattaatcttcttaa 170  Q
    ||||||||||||||||||||||||||||||||||    
T  39075032 tttcaatgcataatttctatattaatcttcttaa 39074999  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 3247769 - 3247803
Alignment:
Q  141 aatgcataatttctatattaatcttcttaactagt 175  Q
    ||||||||| |||||||||||||||||||||||||    
T  3247769 aatgcataacttctatattaatcttcttaactagt 3247803  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 15646162 - 15646121
Alignment:
Q  137 tttcaatgcataatttctatattaatcttcttaactagtgcc 178  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15646162 tttcaatgcataatttctatattaatcttcttaactagtgcc 15646121  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 14321104 - 14321140
Alignment:
Q  137 tttcaatgcataatttctatattaatcttcttaacta 173  Q
    |||||||||||||||||||||||||||||||||||||    
T  14321104 tttcaatgcataatttctatattaatcttcttaacta 14321140  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 27858777 - 27858818
Alignment:
Q  137 tttcaatgcataatttctatattaatcttcttaactagtgcc 178  Q
    |||||| ||||||||| ||||||||||||||||| |||||||    
T  27858777 tttcaacgcataatttttatattaatcttcttaattagtgcc 27858818  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 34767307 - 34767266
Alignment:
Q  137 tttcaatgcataatttctatattaatcttcttaactagtgcc 178  Q
    |||||| ||||||||| |||||||||||||||||||| ||||    
T  34767307 tttcaaggcataatttttatattaatcttcttaactaatgcc 34767266  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 33776707 - 33776679
Alignment:
Q  148 aatttctatattaatcttcttaactagtg 176  Q
    |||||||||||||||||||||||||||||    
T  33776707 aatttctatattaatcttcttaactagtg 33776679  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 28749947 - 28749909
Alignment:
Q  140 caatgcataatttctatattaatcttcttaactagtgcc 178  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28749947 caatgcataatttctatattaatcttcttaactagtgcc 28749909  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 27924067 - 27924105
Alignment:
Q  140 caatgcataatttctatattaatcttcttaactagtgcc 178  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27924067 caatgcataatttctatattaatcttcttaactagtgcc 27924105  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 32004442 - 32004408
Alignment:
Q  141 aatgcataatttctatattaatcttcttaactagt 175  Q
    |||||||||||||||||||||||||||||||||||    
T  32004442 aatgcataatttctatattaatcttcttaactagt 32004408  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 35803586 - 35803624
Alignment:
Q  137 tttcaatgcataatttctatattaatcttcttaactagt 175  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  35803586 tttcaatgcataatttctatattaaacttcttaactagt 35803624  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 16467932 - 16467965
Alignment:
Q  140 caatgcataatttctatattaatcttcttaacta 173  Q
    ||||||||||||||||||||||||||||||||||    
T  16467932 caatgcataatttctatattaatcttcttaacta 16467965  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 55292373 - 55292404
Alignment:
Q  145 cataatttctatattaatcttcttaactagtg 176  Q
    ||||||||||||||||||||||||||||||||    
T  55292373 cataatttctatattaatcttcttaactagtg 55292404  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 173
Target Start/End: Complemental strand, 38179860 - 38179832
Alignment:
Q  145 cataatttctatattaatcttcttaacta 173  Q
    |||||||||||||||||||||||||||||    
T  38179860 cataatttctatattaatcttcttaacta 38179832  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 47769688 - 47769648
Alignment:
Q  137 tttcaatgcataatttctatattaatcttcttaactagtgc 177  Q
    ||||||| |||||||| |||||||||||| |||||||||||    
T  47769688 tttcaatacataatttttatattaatctttttaactagtgc 47769648  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 37807267 - 37807232
Alignment:
Q  141 aatgcataatttctatattaatcttcttaactagtg 176  Q
    ||||||||||||||||||||||||||||||||||||    
T  37807267 aatgcataatttctatattaatcttcttaactagtg 37807232  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 37985181 - 37985140
Alignment:
Q  137 tttcaatgcataatttctatattaatcttcttaactagtgcc 178  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  37985181 tttcaatgtataatttctatattaatcttattaactagtgcc 37985140  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 5963982 - 5963946
Alignment:
Q  137 tttcaatgcataatttctatattaatcttcttaacta 173  Q
    |||||||||||||||| |||||||||||| |||||||    
T  5963982 tttcaatgcataatttttatattaatctttttaacta 5963946  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 36272 - 36209
Alignment:
Q  140 caatgcataatttctatattaatcttcttaactagtgccttaaaaagacactagttaacattttcc 205  Q
    |||||||||||||||||| || ||||||||||||||||| |  || ||||||||||| ||||||||    
T  36272 caatgcataatttctataatagtcttcttaactagtgccct--aaggacactagttagcattttcc 36209  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 27133951 - 27133906
Alignment:
Q  137 tttcaatgcataatttctatattaatcttcttaactagtgccttaa 182  Q
    |||||||||| |||| ||||||||||||||||||||| ||||||||    
T  27133951 tttcaatgcaaaattactatattaatcttcttaactaatgccttaa 27133906  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 3807918 - 3807889
Alignment:
Q  148 aatttctatattaatcttcttaactagtgc 177  Q
    ||||||||||||||||||||||||||||||    
T  3807918 aatttctatattaatcttcttaactagtgc 3807889  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 23898842 - 23898879
Alignment:
Q  140 caatgcataatttctatattaatcttcttaactagtgc 177  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  23898842 caatacataatttctatgttaatcttcttaactagtgc 23898879  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 24924627 - 24924659
Alignment:
Q  141 aatgcataatttctatattaatcttcttaacta 173  Q
    |||||||||||||||||||||||||||||||||    
T  24924627 aatgcataatttctatattaatcttcttaacta 24924659  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 51672538 - 51672506
Alignment:
Q  141 aatgcataatttctatattaatcttcttaacta 173  Q
    |||||||||||||||||||||||||||||||||    
T  51672538 aatgcataatttctatattaatcttcttaacta 51672506  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 52201322 - 52201288
Alignment:
Q  148 aatttctatattaatcttcttaactagtgccttaa 182  Q
    ||||| |||||||||||||||||||||||||||||    
T  52201322 aatttatatattaatcttcttaactagtgccttaa 52201288  T

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