View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2062_high_21 (Length: 237)
Name: NF2062_high_21
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2062_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 41792689 - 41792584
Alignment:
| Q |
116 |
agtactgattagtgattacttaccaattgttaacttaaaagctgcaagttagaccattctctaaaattatttaagatcctttatttcattgtaagatttc |
215 |
Q |
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| T |
41792689 |
agtactgattagtgattacttaccaattgtcaacttaaaagctgcaagttagaccattctctaaaattatttaagatcctttacttcattgtaagacttc |
41792590 |
T |
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| Q |
216 |
tattat |
221 |
Q |
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|||||| |
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| T |
41792589 |
tattat |
41792584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 41792765 - 41792675
Alignment:
| Q |
10 |
attattgtatcaagtaattgagaaattcttggatcttttttagaaataaaactaatagtctttcattctttttgttagtactgattagtga |
100 |
Q |
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| T |
41792765 |
attattgtatcaagtaattgagaaattcttggatctttttcagaaataaaactaatagtctatcattctttttgttagtactgattagtga |
41792675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 41778550 - 41778487
Alignment:
| Q |
128 |
tgattacttaccaattgttaacttaaaagctgcaa-gttagaccattctctaaaattatttaagat |
192 |
Q |
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| T |
41778550 |
tgattacttactgattgttaactttaaagccgcaaagttagaccattctct--aattatttaagat |
41778487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 41789898 - 41789849
Alignment:
| Q |
46 |
tttttagaaataaaactaatagtctttcattctttttgttagtactgatta |
96 |
Q |
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||||||||||||||| ||| |||||| ||||||||||||| |||||||||| |
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| T |
41789898 |
tttttagaaataaaagtaaaagtctt-cattctttttgttggtactgatta |
41789849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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