View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2062_high_5 (Length: 460)
Name: NF2062_high_5
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2062_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 171 - 449
Target Start/End: Complemental strand, 2426494 - 2426216
Alignment:
| Q |
171 |
gtaaaagtataatatttttcaaagtctatcaatttggttcacctatcatttatatcaatgcaccaaacctaataaggcagaaagagtttataaaaaggac |
270 |
Q |
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| T |
2426494 |
gtaaaagtataatatttatcaaagtctatcaatttggttcacctatcatttatatcaatgcaccaaacctaataaggcagaaagagtttataaagagaac |
2426395 |
T |
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| Q |
271 |
gcgtatataactgattttataatgatgacttaagccaatattagagcattgcgttccaatttgaacaatgattggttgaccaccttatatgacatacatc |
370 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| | || |||||||||||| |
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| T |
2426394 |
acgtatatagctgattttatgatgatgacttaagccaatattagagcattgggctccaatttgagcaatgattggttgaccatcctaaatgacatacatc |
2426295 |
T |
|
| Q |
371 |
cttttaacttctacacacaaaagtgacacgtggtgatgtggcccccacacacttaccaactttatctctcactctctct |
449 |
Q |
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| T |
2426294 |
cctttaactttcacacacaaaagtgacacgtggtgatgtggcccccacacacttaccaattttatctccgactctctct |
2426216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 2426641 - 2426537
Alignment:
| Q |
18 |
gatatgatatcatagtttatcagatgggtttaattaggctcaacataaaagaaatttggtttcgtaaagttgagttagacccaatataaaaagtttagat |
117 |
Q |
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| T |
2426641 |
gatatgatatcatagtttatcaaatgggtttaattaggctcaatataaaagaaatttggtttcgtaaagttgagttagacccaatataaaaagtttagat |
2426542 |
T |
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| Q |
118 |
ccaat |
122 |
Q |
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||||| |
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| T |
2426541 |
ccaat |
2426537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 9722509 - 9722612
Alignment:
| Q |
346 |
ttgaccaccttatatgacatacatccttttaacttctacacacaaaagtgacacgtggtgatgtggcccccacacacttaccaactttatctctcactct |
445 |
Q |
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||||||||||||| |||||||| | ||||| | |||||||| |||||||| |||||| || || ||||||||||||| ||||| ||||||||||||| | |
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| T |
9722509 |
ttgaccaccttatgcgacatacaccattttatcctctacacataaaagtgatacgtggcgacgtagcccccacacactcaccaattttatctctcacttt |
9722608 |
T |
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| Q |
446 |
ctct |
449 |
Q |
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|||| |
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| T |
9722609 |
ctct |
9722612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 42758302 - 42758387
Alignment:
| Q |
336 |
caatgattggttgaccaccttatatgacatacatccttttaa-cttctacacacaaaagtgacacgtggtgatgtggcccccacaca |
421 |
Q |
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| T |
42758302 |
caatgataggttgaccacttcatatgatatacatccctttaatcttc-atacacaaaagtgacatgtggtgacgtggctcccacaca |
42758387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 454
Target Start/End: Original strand, 237500 - 237626
Alignment:
| Q |
328 |
aatttgaacaatgattggttgaccaccttatatgacatacatccttttaacttctacacacaaaagtgacacgtggtgatgtggcccccacacacttacc |
427 |
Q |
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||||||| ||||||| |||||||||| || || |||||| || || || |||||||||||||||||||| || |||||||| ||||||||| ||| |
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| T |
237500 |
aatttgagcaatgataggttgaccactccatgtggcatacaccccttgtacctctacacacaaaagtgacacatgaccatgtggcctccacacactcacc |
237599 |
T |
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| Q |
428 |
aactttatctctcactctctctgctcc |
454 |
Q |
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|||||||||||||||| ||||| |||| |
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| T |
237600 |
aactttatctctcactttctcttctcc |
237626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 23797559 - 23797599
Alignment:
| Q |
414 |
cccacacacttaccaactttatctctcactctctctgctcc |
454 |
Q |
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| T |
23797559 |
cccacacacttaccaactttgtctctcattctctcttctcc |
23797599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 25875094 - 25875167
Alignment:
| Q |
381 |
ctacacacaaaagtgacacgtggtgatgtggcccccacacacttaccaactttatctctcactctctctgctcc |
454 |
Q |
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|||||||||||||| |||| ||| |||||| || ||||||| | ||||| ||||||||||||||||||| |||| |
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| T |
25875094 |
ctacacacaaaagtaacacatggcgatgtgacctccacacaatcaccaattttatctctcactctctcttctcc |
25875167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 454
Target Start/End: Complemental strand, 41776488 - 41776397
Alignment:
| Q |
363 |
catacatccttttaacttctacacacaaaagtgacacgtggtgatgtggcccccacacacttaccaactttatctctcactctctctgctcc |
454 |
Q |
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||||||||| || || ||||||||||||||||||| || | ||||||| |||||||||| ||||||| |||||||| |||||| |||| |
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| T |
41776488 |
catacatccattgtacatctacacacaaaagtgacatgtagcgatgtggttcccacacactcctcaactttgtctctcaccctctcttctcc |
41776397 |
T |
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