View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2062_high_6 (Length: 442)
Name: NF2062_high_6
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2062_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 2714736 - 2714316
Alignment:
| Q |
17 |
aattagcagcaaccaaaaaacaggtgaaagagtaaaactcacttcatggaaaactccttcagatccagctattgggaaattctctgcaagcattgagcgc |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2714736 |
aattagcagcaaccaaaaaacaggtgaaagagtaaaactcacttcatggaaaactccttcagatccagctattgggaaattctctgctagcattgagcgc |
2714637 |
T |
|
| Q |
117 |
ctcaatgctcctgaaatttttgtatggaaccaaacaaatccatgttggcgctcaggtccatggaatggtcaagattttcttggttggacacatgattata |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2714636 |
ttcaatgctcctgaaatttttgtatggaaccaaacaaatccatgttggcgctcaggtccatggaatggtcaagattttcttggttggacacatgattata |
2714537 |
T |
|
| Q |
217 |
aggtttcttcttctccatatctattaggtgtcagcattacaaggaaagataatggaagtcttgttgagtttacatatacattgccagatagttcattctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2714536 |
aggtttcttcttctccatatctattaggtgtcagcattacaaggaaagataatggaagtcttgttgagtttacatatacattgccagatagttcattctt |
2714437 |
T |
|
| Q |
317 |
tttaacccttgtactgagttctgaaggcaaggttgtgtatactgcatggatgaatagggttcaagttcggaagctgtttgttcaaccaaatgattgtgat |
416 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2714436 |
tttaacccttgtactgagttctgaaggcaaggtagtgtatactgcatggatgaatagggttcaagttcggaagctgtttgttcaatcaaatgattgtgat |
2714337 |
T |
|
| Q |
417 |
tcttatggtatctgtgctcct |
437 |
Q |
| |
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||||||||||| |||| |||| |
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| T |
2714336 |
tcttatggtatttgtggtcct |
2714316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 2709696 - 2709281
Alignment:
| Q |
19 |
ttagcagcaaccaaaaaacaggtgaaagagtaaaactcacttcatggaaaactccttcagatccagctattgggaaattctctgcaagcattgagcgcct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| | |
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| T |
2709696 |
ttagcagcaaccaaaaaacaggtgaaagagtaaaagccacttcatggaaaactccttcagctccagctattgggaaattctctgctaccattgagcgttt |
2709597 |
T |
|
| Q |
119 |
caatgctcctgaaatttttgtatggaaccaaacaaatccatgttggcgctcaggtccatggaatggtcaagattttcttggttggacacatgattataag |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| | || | ||| | |
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| T |
2709596 |
caatgctcctgaaatttttgtatggaaccaaacaaaaccgtattggcgctcaggtccatggaatggtcaagattttcttggtttggcaagtaatt----g |
2709501 |
T |
|
| Q |
219 |
gtt-tcttcttctccatatctattaggtgtcagcattacaaggaaagataatggaagtcttgttgagtttacatatacattgccagatagttcattcttt |
317 |
Q |
| |
|
||| || ||||| || ||||| ||| | | ||||| |||| ||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||| |
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| T |
2709500 |
gttgcctacttctgcaaatctaaaagggtttatcattagaagggaagataatggaagtcttgttgagattacatatacattgccaaacagttccttcttt |
2709401 |
T |
|
| Q |
318 |
ttaacccttgtactgagttctgaaggcaaggttgtgtatactgcatggatgaatagggttcaagttcggaagctgtttgttcaaccaaatgattgtgatt |
417 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||||| ||||| ||||| |||| | ||||||||||||||| | | ||||||| ||||||||||||| |
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| T |
2709400 |
gcaaccattgtattgagttctgaaggcaagcttgtgtacactgcctggatcaatatgattcaagttcggaagcgggtagttcaacaaaatgattgtgatg |
2709301 |
T |
|
| Q |
418 |
cttatggtatctgtgctcct |
437 |
Q |
| |
|
||||||||| |||| |||| |
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| T |
2709300 |
tttatggtatttgtggtcct |
2709281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 2747570 - 2747399
Alignment:
| Q |
18 |
attagcagcaaccaaaaaacaggtgaaagagtaaaactcacttcatggaaaactccttcagatccagctattgggaaattctctgcaagcattgagcgcc |
117 |
Q |
| |
|
||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| | ||||| | |
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| T |
2747570 |
attagcacaaaccaaagaacaggggaaaaagtaaaactcacttcatggaaaactccttctgatccagctattggggaattctcttttagcctggagcgtc |
2747471 |
T |
|
| Q |
118 |
tcaatgctcctgaaatttttgtatggaaccaaacaaatccatgttggcgctcaggtccatggaatggtcaag |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||||||| |
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| T |
2747470 |
tcaatgctcctgaaatttttgtatggaaccaaacaaaaccttactggcgctcaggtccatttaatggtcaag |
2747399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 2720698 - 2720525
Alignment:
| Q |
16 |
caattagcagcaaccaaaaaacaggtgaaagagtaaaactcacttcatggaaaactccttcagatccagctattgggaaattctctgcaagcattgagcg |
115 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||| || |||||| ||| | ||||| |
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|
| T |
2720698 |
caattagcaccaaccaaaaaacaggggaaaaagtaaaactcacttcttggaaaactccttcagatccagcttatggaaacttctcttttagcctcgagcg |
2720599 |
T |
|
| Q |
116 |
cctcaatgctcctgaaatttttgtatggaaccaaacaaatccatgttggcgctcaggtccatggaatggtcaag |
189 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||| || | |||||||||||||||||||||||||||| |
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|
| T |
2720598 |
tctcaacgctcctgaagtgtttgtatggaaccaaacaaaaccttactggcgctcaggtccatggaatggtcaag |
2720525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 2726087 - 2725915
Alignment:
| Q |
17 |
aattagcagcaaccaaaaaacaggtgaaagagtaaaactcacttcatggaaaactccttcagatccagctattgggaaattctctgcaagcattgagcgc |
116 |
Q |
| |
|
|||||||| ||||||| |||||| |||| ||||||| |||||| ||||||||||||| |||||||||||||| || |||||| ||| ||||||| |
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| T |
2726087 |
aattagcacaaaccaaagaacaggggaaaaagtaaaatacacttcttggaaaactcctttggatccagctattggaaacttctctcttagccttgagcgt |
2725988 |
T |
|
| Q |
117 |
ctcaatgctcctgaaatttttgtatggaaccaaacaaatccatgttggcgctcaggtccatggaatggtcaag |
189 |
Q |
| |
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||||| ||||||| | |||||||||||||||||||| || | |||||||||||||||||||||||||||| |
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| T |
2725987 |
ctcaacagtcctgaagtgtttgtatggaaccaaacaaagccttactggcgctcaggtccatggaatggtcaag |
2725915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 2747344 - 2747281
Alignment:
| Q |
247 |
tcagcattacaaggaaagataatggaagtcttgttgagtttacatatacattgccagatagttc |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||| |||||| ||| | ||||||| |
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|
| T |
2747344 |
tcagcatttcaaggaaagataatggaagtcttgttgagactacgtatacactgctaaatagttc |
2747281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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