View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2062_low_1 (Length: 633)
Name: NF2062_low_1
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2062_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 17772479 - 17772233
Alignment:
| Q |
15 |
tattaattaagaatatgattaagaaaaaataataaatactcttagtaattactaatttgtatagagacttatatttaaggattatannnnnnnnaaatgg |
114 |
Q |
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| T |
17772479 |
tattaattaaggatatgattaagaaaaaataataaatactcttagtaattattaatttgtatagggatttatatttaaggactatattttttttaaatgg |
17772380 |
T |
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| Q |
115 |
gttttataattcgggacagagaagtattaaaatattaaatatttcaaattcaatataatagttgttgattgttaaaagtagttagctatgagacatttgt |
214 |
Q |
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| T |
17772379 |
attttataattcgtgacagagaagtattaaaatattaaatatttcaaattcaatataatagttgttgattgttgaaagtagtttgctatgagacatttgt |
17772280 |
T |
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| Q |
215 |
tatttgtcatctactatctacttttcgtcaaagagagattaattcac |
261 |
Q |
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| T |
17772279 |
tatctgtcatctactatctacttttcgtcaaagagagattaattcac |
17772233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 514 - 583
Target Start/End: Complemental strand, 17772031 - 17771965
Alignment:
| Q |
514 |
ttctacattgagtaatcatatgttgagattcaaattttaacatgtaatattgcgaaaagtccaatccatt |
583 |
Q |
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| T |
17772031 |
ttctacaatgagtaatcatatg---agattcaaattttaacatgtcatattgcgaaaactccaatccatt |
17771965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 10934130 - 10934168
Alignment:
| Q |
13 |
aatattaattaagaatatgattaagaaaaaataataaat |
51 |
Q |
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| T |
10934130 |
aatattaattaagaatatgtttaagaaaaaataataaat |
10934168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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