View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2062_low_10 (Length: 363)
Name: NF2062_low_10
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2062_low_10 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 9605370 - 9605495
Alignment:
| Q |
102 |
ccattgatattgttaatgataacggatgatcatgtatatggattatttaacaatcaagaaggtccgttatagttaatacctattcaatcttactttatta |
201 |
Q |
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| T |
9605370 |
ccattgatattgttaatgataagagatgatcatgtat--ggattatttaacaatcaagaaggttcattatagttaatacctattcaatcttactttatta |
9605467 |
T |
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| Q |
202 |
tccaatgctaattaagctgttatgatgg |
229 |
Q |
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| T |
9605468 |
tccaatgctaattaagctgttatgatgg |
9605495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 9601715 - 9601794
Alignment:
| Q |
244 |
agtttatgaatcaggcaactcggtaaagcaactacaacgtaaataagaagtaatactcgtttcatctaacaacagtttgtgggga |
328 |
Q |
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| T |
9601715 |
agtttatgaatcaagcaacttggtaaagaaactacaacgtaaataagaagtaatac-----tcatctaacaacagtttgtgggga |
9601794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 9580693 - 9580781
Alignment:
| Q |
35 |
taaggcttctaaacaaggtaagctgattgcaatttgcatagagaaaga-aactgaaatgaagtgaatcccattgatattgttaatgataa |
123 |
Q |
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| T |
9580693 |
taaggcttctaaacaaggtaagctgattgcaatttgcaga-aaaaagataactgagttgaagtgaatccaattgatgttgttaatgataa |
9580781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 9586388 - 9586476
Alignment:
| Q |
35 |
taaggcttctaaacaaggtaagctgattgcaatttgcatagagaaaga-aactgaaatgaagtgaatcccattgatattgttaatgataa |
123 |
Q |
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| T |
9586388 |
taaggcttctaaacaaggtaagctgattgcaatttgcaga-aaaaagataactgagttgaagtgaatccaattgatgttgttaatgataa |
9586476 |
T |
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Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 9574460 - 9574396
Alignment:
| Q |
228 |
ggacaagtacaaattcagtttatgaatcaggcaactcggtaaagcaactacaacgtaaataagaa |
292 |
Q |
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| T |
9574460 |
ggacaagtacaaattcagtttatgaatcaagcaactcggtaaagaaaccacaacataaataagaa |
9574396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 9592954 - 9593018
Alignment:
| Q |
237 |
caaattcagtttatgaatcaggcaactcggtaaagcaactacaacgtaaataagaagtaatactc |
301 |
Q |
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| T |
9592954 |
caaattcagtctacgaatcaagcaactccgtaaagaaaccacaatataaataagaagtaatactc |
9593018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 9592445 - 9592487
Alignment:
| Q |
143 |
attatttaacaatcaagaaggtccgttatagttaatacctatt |
185 |
Q |
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| T |
9592445 |
attatttaacaatcaagaaagtccattatagtttatacctatt |
9592487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 29142265 - 29142179
Alignment:
| Q |
143 |
attatttaacaatcaagaaggtccgttatagttaatacctattcaatcttactttattatccaatgctaattaagctgttatgatgg |
229 |
Q |
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| T |
29142265 |
attatttaacaatcatgaagctgcattattgtttatgcttattctatcttacattattatccaatgcaaattaagctgttatgatgg |
29142179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 30036297 - 30036366
Alignment:
| Q |
54 |
aagctgattgcaatttgcatagagaaagaaactgaaatgaagtgaatcccattgatattgttaatgataa |
123 |
Q |
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| T |
30036297 |
aagctgattgcaatttgcacagagaaataacctgaattaaactgaatccaattggtgttcttaatgataa |
30036366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 30152033 - 30152102
Alignment:
| Q |
54 |
aagctgattgcaatttgcatagagaaagaaactgaaatgaagtgaatcccattgatattgttaatgataa |
123 |
Q |
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| T |
30152033 |
aagctgattgcaatttgcacagagaaataacctgaattaaactgaatccaattggtgttcttaatgataa |
30152102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 41474 - 41406
Alignment:
| Q |
54 |
aagctgattgcaatttgcatagagaaagaaactgaaatgaagtgaatcccattgatattgttaatgata |
122 |
Q |
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| T |
41474 |
aagctgattgcaatttgcacagagaaataacctgaagtgaagtgaatccaattggtgttgttaatgata |
41406 |
T |
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