View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2062_low_11 (Length: 354)
Name: NF2062_low_11
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2062_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 26157548 - 26157205
Alignment:
| Q |
1 |
gccagctggaaagcatcaacattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26157548 |
gccagctggaaagcatcaacattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaagatgaaaagcat |
26157449 |
T |
|
| Q |
101 |
taccaaatcgtgatttcttatgctcttttatagtcaaggttttgacaggcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26157448 |
taccaaatcgtgatttcttatgctcttttatagtcaaggttttgacaggctttaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtg |
26157349 |
T |
|
| Q |
201 |
aattaacagattcaacatattgtacccctgccgacagacttgaagacctgcttcaaaccaatcaagttctgtcgtctggaaaaactttgttgcttgaagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
26157348 |
aattaacagattcaacatattgtacccctgccgacagacttgaagacctgcttcaaaacaataaagttctgtcgtctggaaaaactttgttgcttcaagt |
26157249 |
T |
|
| Q |
301 |
gatctgaataagtgtttcnnnnnnngagccttaggaggtctgtg |
344 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
26157248 |
gatctgaataagtgtttctttttttgagccttaggaggtctgtg |
26157205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 26170846 - 26170503
Alignment:
| Q |
1 |
gccagctggaaagcatcaacattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26170846 |
gccagctggaaagcatcaacattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaagatgaaaagcat |
26170747 |
T |
|
| Q |
101 |
taccaaatcgtgatttcttatgctcttttatagtcaaggttttgacaggcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26170746 |
taccaaatcgtgatttcttatgctcttttatagtcaaggttttgacaggctttaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtg |
26170647 |
T |
|
| Q |
201 |
aattaacagattcaacatattgtacccctgccgacagacttgaagacctgcttcaaaccaatcaagttctgtcgtctggaaaaactttgttgcttgaagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
26170646 |
aattaacagattcaacatattgtacccctgccgacagacttgaagacctgcttcaaaacaataaagttctgtcgtctggaaaaactttgttgcttcaagt |
26170547 |
T |
|
| Q |
301 |
gatctgaataagtgtttcnnnnnnngagccttaggaggtctgtg |
344 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
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|
| T |
26170546 |
gatctgaataagtgtttctttttttgagccttaggaggtctgtg |
26170503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 44783925 - 44784268
Alignment:
| Q |
1 |
gccagctggaaagcatcaacattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcat |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
44783925 |
gccagctggaaagcatcaacgttacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaagatgaaaagcat |
44784024 |
T |
|
| Q |
101 |
taccaaatcgtgatttcttatgctcttttatagtcaaggttttgacaggcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| |
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|
| T |
44784025 |
taccaaatcgtgatttcttacgctcttttgtagtcaaggttttgacaggctttaaattgaaattataatcaaggtgaagatagttcaaatttttcctgtg |
44784124 |
T |
|
| Q |
201 |
aattaacagattcaacatattgtacccctgccgacagacttgaagacctgcttcaaaccaatcaagttctgtcgtctggaaaaactttgttgcttgaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
44784125 |
aattaacagattcaacatattgtacccctgtcgacagacttgaagacctgcttcaacccaatcaagttctgtggtctggaaaaactttgttgcttgaagt |
44784224 |
T |
|
| Q |
301 |
gatctgaataagtgtttcnnnnnnngagccttaggaggtctgtg |
344 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |
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| T |
44784225 |
gatctgaataagtgtttctttttttgagccttgggaggtctgtg |
44784268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 2896677 - 2896365
Alignment:
| Q |
1 |
gccagctggaaagcatcaacattacccaaacggaactgaacattggcatccaccacaagttttgtcaaacgaaggatctcacggcaaaggtgaaaagcat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||| |
|
|
| T |
2896677 |
gccagctgaaaagcatcaacattacccaagcgatactgaacattggcatccaccacaagtttcgtcaaacgaaggatctcacgacagagatgaaaagcat |
2896578 |
T |
|
| Q |
101 |
taccaaatcgtgatttcttatgctcttttatagtcaaggttttgacaggcattaaattgaaattataatcaaggtgaaggtagttcaaatttttccggtg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2896577 |
taccaaatcgtgatttcttacgctcttttgtagtcaaggttttgacaggcttcaaattaaaattataatcaaggtgaaggtagttcaaatttttcctgtg |
2896478 |
T |
|
| Q |
201 |
aattaacagattcaacatattgtacccctgccgacagacttgaagacctgcttcaaaccaatcaagttctgtcgtctggaaaaactttgttgcttgaagt |
300 |
Q |
| |
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|| |||||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
2896477 |
tatcaacagattcaacatgttgtacccctgcttacaaacttgaagacctgcttcaacccaatcaagttctgtggtctggaaaaactttgtcgcttgaagt |
2896378 |
T |
|
| Q |
301 |
gatctgaataagt |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
2896377 |
gatctgaataagt |
2896365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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