View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2062_low_12 (Length: 354)
Name: NF2062_low_12
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2062_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 34956187 - 34955859
Alignment:
| Q |
10 |
atgaatatcctaagcacttcatgccaaaaacttgtgtgtctaagcaaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagatcaa |
109 |
Q |
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| T |
34956187 |
atgaatatcctaagcacttcatgccaaaaacttgtgtgtctaagcaaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagatcaa |
34956088 |
T |
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| Q |
110 |
acccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctcttaaacccttaggtcaaacacnnnnnnnttt |
209 |
Q |
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| T |
34956087 |
acccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagctctaaaacccttaggtcaaacacaaaaaaattt |
34955988 |
T |
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| Q |
210 |
agatttgttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatggaaattttttctaacactcaattaatcatcattaccatc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34955987 |
agatttgttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatgggaattttttctaacactcaattaatcatcattaccatc |
34955888 |
T |
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| Q |
310 |
ttaatgttcataggtggtgaagtctttac |
338 |
Q |
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| T |
34955887 |
ttaatgttcataggtggtgaagtctttac |
34955859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 54 - 338
Target Start/End: Complemental strand, 34974605 - 34974321
Alignment:
| Q |
54 |
caaatcaatatatatctcagcagcatgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaact |
153 |
Q |
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| T |
34974605 |
caaatcaatttttttcttagcagcatgtttttgtcgcttcatcctcctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaact |
34974506 |
T |
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| Q |
154 |
ttgggttttggatttctcaaagctcttaaacccttaggtcaaacacnnnnnnntttagatttgttcttcacatccgtttcatccaccacagtttcaagca |
253 |
Q |
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|||||||||||||||||||||| ||| ||||| |||||| |||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
34974505 |
ttgggttttggatttctcaaagttctaaaacctttaggtgaaacacctaaaaatttagatttgttcttcacatccatttcagccaccacagtttcaagca |
34974406 |
T |
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| Q |
254 |
tggtcacggttgaaatggaaattttttctaacactcaattaatcatcattaccatcttaatgttcataggtggtgaagtctttac |
338 |
Q |
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|| ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34974405 |
tgtccacggttgaaatgcaaaatttttctaaccctcaattaatcatcattaccatcttaatgttcataggtggtgaagtttttac |
34974321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 78 - 338
Target Start/End: Complemental strand, 35035308 - 35035045
Alignment:
| Q |
78 |
atgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaactttgggttttggatttctcaaagct |
177 |
Q |
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|||||| ||||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||| || ||||| ||| || |||||||||||||||||| |
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| T |
35035308 |
atgtttttatcgcttcatcctcctaagagcaaatccattatgtgttcaaattctatatttcatctctatttccttttttgggtttggatttctcaaagct |
35035209 |
T |
|
| Q |
178 |
cttaaacccttaggtcaaaca---cnnnnnnntttagatttgttcttcacatccgtttcatccaccacagtttcaagcatggtcacggttgaaatggaaa |
274 |
Q |
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|| || || ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35035208 |
ctaaaccctttatatcaaacatcacctaaaaacttagatttgttcttcacatccgtttcatccaccacagtttcaagcatgtccacggttgaaatggaat |
35035109 |
T |
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| Q |
275 |
ttttttctaacactcaattaatcatcattaccatcttaatgttcataggtggtgaagtctttac |
338 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35035108 |
ttttttctaaccctcaattaatcatcattaccatcttaatgttcataggtggtgaaatctttac |
35035045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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