View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2062_low_14 (Length: 331)
Name: NF2062_low_14
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2062_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 54106959 - 54107283
Alignment:
| Q |
1 |
agcaatcatatcccattatttcggttacacttttccaccactcactttcatcaatgattgttaatgcatgaataaatgagttcattggtgttgatatttg |
100 |
Q |
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| T |
54106959 |
agcaatcatatcccattatttcggttacacttttccaccactcactttcatcaatgattgttaatgcatgaataaatgagttcattggtgttgatatttg |
54107058 |
T |
|
| Q |
101 |
ttttggtgtactccatttatcgtaaatcatgtgtcgttcaagaaaataatgaaagtaaagctggagaaaatatcaatcgattcattgaagaattgaaaat |
200 |
Q |
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| T |
54107059 |
ttttggtgtactccatttatcgtaaatcatgtgtcgttcaagaaaataatgaaagtaaagctggagaaaatatcaatcgattcattgaagaattgaaaat |
54107158 |
T |
|
| Q |
201 |
tacacttaatttgaattaaatattttattgttaaaatggcaccaattttaaaacaaaatact-attattagcaaaaatacgtaagaaatttgtaggtcct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
54107159 |
tacacttaatttgaattaaatattttattgttaaaatggcaccaattttaaaacaaaatactaattattagcaaaaatacgtaagaaacttgtaggtcct |
54107258 |
T |
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| Q |
300 |
gttgccactttctcatttcttctct |
324 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
54107259 |
gttgccactttctcatttcttctct |
54107283 |
T |
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