View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2062_low_17 (Length: 316)
Name: NF2062_low_17
Description: NF2062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2062_low_17 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 301
Target Start/End: Complemental strand, 2759563 - 2759272
Alignment:
| Q |
10 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2759563 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
2759464 |
T |
|
| Q |
110 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacaatgcaagcttgacaatcaaactgtgttgttac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2759463 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttac |
2759364 |
T |
|
| Q |
210 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgcaccct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2759363 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccct |
2759272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 301
Target Start/End: Complemental strand, 2818906 - 2818615
Alignment:
| Q |
10 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
109 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||| | || ||||||||||| |
|
|
| T |
2818906 |
aagaatattaaatacctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcag |
2818807 |
T |
|
| Q |
110 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacaatgcaagcttgacaatcaaactgtgttgttac |
209 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
2818806 |
cttcctgataaaattgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttac |
2818707 |
T |
|
| Q |
210 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgcaccct |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
2818706 |
cttttggctgtcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccct |
2818615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 301
Target Start/End: Complemental strand, 2769418 - 2769127
Alignment:
| Q |
10 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| | | ||||||| |||||||||||||||||||| ||||| | ||||| ||||||| |
|
|
| T |
2769418 |
aagaatatcaaatacctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcag |
2769319 |
T |
|
| Q |
110 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacaatgcaagcttgacaatcaaactgtgttgttac |
209 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||| | || ||||| |
|
|
| T |
2769318 |
tttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttac |
2769219 |
T |
|
| Q |
210 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgcaccct |
301 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
2769218 |
cttttggctgtcataaactagtttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccct |
2769127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 301
Target Start/End: Complemental strand, 2807616 - 2807325
Alignment:
| Q |
10 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| || ||| ||||||||| ||||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
2807616 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcag |
2807517 |
T |
|
| Q |
110 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacaatgcaagcttgacaatcaaactgtgttgttac |
209 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||| |
|
|
| T |
2807516 |
tttcctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttac |
2807417 |
T |
|
| Q |
210 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgcaccct |
301 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||| ||||| |||||| |||||| |
|
|
| T |
2807416 |
cgtttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccct |
2807325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 10 - 301
Target Start/End: Original strand, 2838389 - 2838680
Alignment:
| Q |
10 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
109 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| ||| || ||| |||||||||| ||||||| ||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
2838389 |
aagaatatcaagtacctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcag |
2838488 |
T |
|
| Q |
110 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacaatgcaagcttgacaatcaaactgtgttgttac |
209 |
Q |
| |
|
|| || ||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||| | |||||| | ||||||||| | || |||||| |
|
|
| T |
2838489 |
ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttac |
2838588 |
T |
|
| Q |
210 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgcaccct |
301 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
2838589 |
cttttggctttcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccct |
2838680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 5413235 - 5412946
Alignment:
| Q |
10 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| || ||| |||||||||||| ||||||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
5413235 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcag |
5413136 |
T |
|
| Q |
110 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacaatgcaagcttgacaatcaaactgtgttgttac |
209 |
Q |
| |
|
|| || ||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||| | |||||| ||||||||| |||| || ||| |
|
|
| T |
5413135 |
ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgatac |
5413036 |
T |
|
| Q |
210 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgcacc |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
5413035 |
cttttggctttcaaaaactagcttggcaagagtggtttttcctaggccccccattcctaccactgatatgactgtacgttccgctgcacc |
5412946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 2855599 - 2855881
Alignment:
| Q |
10 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
109 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||| | | ||||||||||| ||||||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
2855599 |
aagaataccaaatacctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcag |
2855698 |
T |
|
| Q |
110 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacaatgcaagcttgacaatcaaactgtgttgttac |
209 |
Q |
| |
|
|| || ||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||| |
|
|
| T |
2855699 |
ttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttac |
2855798 |
T |
|
| Q |
210 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcag |
292 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| || | |||||||||||| ||||||||||||||| |||| |||| |
|
|
| T |
2855799 |
cttttggctgtcaaaaattagcttggcaagagtagtttttcctataccccccattcccaccactgaaatcactttgcgctcag |
2855881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 2797710 - 2797425
Alignment:
| Q |
10 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
109 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||| ||| || | | |||||| |||| |||||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
2797710 |
aagaatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcag |
2797611 |
T |
|
| Q |
110 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacaatgcaagcttgacaatcaaactgtgttgttac |
209 |
Q |
| |
|
|||| |||||||| | ||||||| || |||| || || ||||| |||||||||||||||||| |||||||| |||||||||| | ||||||||| |
|
|
| T |
2797610 |
tttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttac |
2797511 |
T |
|
| Q |
210 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctg |
295 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2797510 |
cttttgactgtcgaaaactagcttggcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctg |
2797425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 2749344 - 2749055
Alignment:
| Q |
10 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| || ||| |||| |||||| ||||||||||||||||||| ||| |||||| ||||| || |
|
|
| T |
2749344 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttag |
2749245 |
T |
|
| Q |
110 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacaatgcaagcttgacaatcaaactgtgttgttac |
209 |
Q |
| |
|
| | |||| |||||| ||||||| ||||||| || |||||||||||||| |||||||||||| | |||||| |||||||||| |||| || ||| |
|
|
| T |
2749244 |
tactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatac |
2749145 |
T |
|
| Q |
210 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgcacc |
299 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||| || || || |||||||||||||| || ||||| ||||| |||||| |||| |
|
|
| T |
2749144 |
ctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcacc |
2749055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 2790672 - 2790506
Alignment:
| Q |
7 |
tcgaagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtctt |
106 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||||| ||| || | | ||| |||||| |||||||||||||||||||| ||| ||||||| ||| |
|
|
| T |
2790672 |
tcgaagaatatcaaatactttttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggcctt |
2790573 |
T |
|
| Q |
107 |
cagtttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaac |
173 |
Q |
| |
|
||||||| |||||||| | ||||||| || |||| || || ||||| ||| ||||||||||||| |
|
|
| T |
2790572 |
cagtttcgctacaaaattcctccatcatgttgatcaatatccccctcacggtgaatgattgagaaac |
2790506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 2790491 - 2790431
Alignment:
| Q |
235 |
gcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctg |
295 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2790491 |
gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctg |
2790431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 5941 - 6226
Alignment:
| Q |
10 |
aagaatatcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcag |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||| || ||| |||| | |||| |||||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
5941 |
aagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcag |
6040 |
T |
|
| Q |
110 |
tttcctgacaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacaatgcaagcttgacaatcaaactgtgttgttac |
209 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||| ||||| |||||||| ||||||| |||||||||| | |||||||| |||||||||| ||||||||||| |
|
|
| T |
6041 |
tttcccgacaaaattgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttac |
6140 |
T |
|
| Q |
210 |
cttttggctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
6141 |
cttttggctgtcaaaaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaattacggtgcgctcagctg |
6226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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